BMRB Entry 28046

Name: RalA.GMPPNP
Published: 2020-02-26

Chem Shift validation: AVS_anomalous, AVS_full
BMRB Entry DOI: doi:10.13018/BMR28046

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

RalA.GMPPNP

Deposition date:

2019-11-25

Original release date:

2020-02-26

Authors:

Shafiq, Arooj; Owen, Darerca

Citation:

Citation: Shafiq, Arooj; Campbell, Louise; Owen, Darerca; Mott, Helen. "NMR resonance assignments for the active and inactive conformations of the small G protein RalA" Biomol. NMR Assignments 14, 87-91 (2020).
PubMed: 31916136

Assembly members:

Assembly members:
RalA, polymer, 184 residues, Formula weight is not available
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, non-polymer, 522.196 Da.

Natural source:

Natural source: Common Name: cotton-top tamarin Taxonomy ID: 9490 Superkingdom: Eukaryota Kingdom: metazoa Genus/species: Saguinus Oedipus

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pGex6P

Entity Sequences (FASTA):

Entity Sequences (FASTA):
RalA: MAANKPKGQNSLALHKVIMV GSGGVGKSALTLQFMYDEFV EDYEPTKADSYRKKVVLDGE EVQIDILDTAGLEDYAAIRD NYFRSGEGFLCVFSITEMES FAATADFREQILRVKEDENV PFLLVGNKSDLEDKRQVSVE EAKNRADQWNVNYVETSAKT RANVDKVFFDLMREIRARKM EDSK

Data sets:

assigned_chemical_shifts
- nucleotide
- Protein

Data type	Count
13C chemical shifts	583
15N chemical shifts	177
1H chemical shifts	1189

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
Hide all

Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	RalA	1
2	PNP	2

Entities:

Entity 1, RalA 184 residues - Formula weight is not available

1

MET

ALA

ASN

LYS

PRO

LYS

GLY

GLN

ASN

2

SER

LEU

ALA

LEU

HIS

LYS

VAL

ILE

MET

VAL

3

GLY

SER

GLY

VAL

GLY

LYS

SER

ALA

LEU

4

THR

LEU

GLN

PHE

MET

TYR

ASP

GLU

PHE

VAL

5

GLU

ASP

TYR

GLU

PRO

THR

LYS

ALA

ASP

SER

6

TYR

ARG

LYS

VAL

LEU

ASP

GLY

GLU

7

GLU

VAL

GLN

ILE

ASP

ILE

LEU

ASP

THR

ALA

8

GLY

LEU

GLU

ASP

TYR

ALA

ILE

ARG

ASP

9

ASN

TYR

PHE

ARG

SER

GLY

GLU

GLY

PHE

LEU

10

CYS

VAL

PHE

SER

ILE

THR

GLU

MET

GLU

SER

11

PHE

ALA

THR

ALA

ASP

PHE

ARG

GLU

GLN

12

ILE

LEU

ARG

VAL

LYS

GLU

ASP

GLU

ASN

VAL

13

PRO

PHE

LEU

VAL

GLY

ASN

LYS

SER

ASP

14

LEU

GLU

ASP

LYS

ARG

GLN

VAL

SER

VAL

GLU

15

GLU

ALA

LYS

ASN

ARG

ALA

ASP

GLN

TRP

ASN

16

VAL

ASN

TYR

VAL

GLU

THR

SER

ALA

LYS

THR

17

ARG

ALA

ASN

VAL

ASP

LYS

VAL

PHE

ASP

18

LEU

MET

ARG

GLU

ILE

ARG

ALA

ARG

LYS

MET

19

GLU

ASP

SER

LYS

Entity 2, PNP - C10 H17 N6 O13 P3 - 522.196 Da.

1

GNP

Samples:

sample_1: RalA, [U-15N], 0.26 ± 0.1 mM; GMPPNP 0.26 ± 0.1 mM; NaCl 150 mM

sample_2: RalA, [U-15N; U-13C], 0.45 ± 0.1 mM; GMPPNP 0.45 ± 0.1 mM; NaCl 150 mM

sample_conditions_1: ionic strength: 150 mM; pH: 7.6; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
3D 1H-15N NOESY	sample_1	isotropic	sample_conditions_1
3D 1H-15N TOCSY	sample_1	isotropic	sample_conditions_1
3D HNCA	sample_2	isotropic	sample_conditions_1
3D HN(CO)CA	sample_2	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_2	isotropic	sample_conditions_1
3D HNCACB	sample_2	isotropic	sample_conditions_1
3D HCCH TOCSY	sample_2	isotropic	sample_conditions_1
3D 1H-13C NOESY aliphatic	sample_2	isotropic	sample_conditions_1

Software:

CCPN v2.4.2, CCPN - chemical shift assignment

NMR spectrometers:

Bruker DRX 500 MHz
Bruker DRX 800 MHz