BMRB Entry 27850

Name: ENDD G5 domain
Published: 2019-04-24

Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR27850

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

ENDD G5 domain

Deposition date:

2019-03-22

Original release date:

2019-04-24

Authors:

Eisenmesser, Elan; Chi, Ying-Chih; Paukovich, Natasia; Redzic, Jasmina; Rahkola, Jeremy; Janoff, Edward

Citation:

Citation: Paukovich, Natasia; Redzic, Jasmina; Chi, Ying-Chih; Rahkola, Jeremy; Issaian, Aaron; Blue, Ashley; Hansen, Kirk; Janoff, Edward; Eisenmesser, Elan. "Streptococcus pneumoniae G5 domains bind different ligands" Protein Sci. 28, 1797-1805 (2019).
PubMed: 31390088

Assembly members:

Assembly members:
ENDD_G5_domain, polymer, 81 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Streptococcus pneumoniae Taxonomy ID: 1313 Superkingdom: Bacteria Kingdom: not available Genus/species: Streptococcus pneumoniae

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pj401

Entity Sequences (FASTA):

Entity Sequences (FASTA):
ENDD_G5_domain: GSHSDQQKAPKLEVQEEKVA FHRQEHENAEMLVGEQRVII QGRDGLLRHVFEVDENGQRR LRSTEVIQEAIPEIVEIGTK V

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	213
15N chemical shifts	69
1H chemical shifts	69

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	ENDD G5 domain	1

Entities:

Entity 1, ENDD G5 domain 81 residues - Formula weight is not available

1

GLY

SER

HIS

SER

ASP

GLN

LYS

ALA

PRO

2

LYS

LEU

GLU

VAL

GLN

GLU

LYS

VAL

ALA

3

PHE

HIS

ARG

GLN

GLU

HIS

GLU

ASN

ALA

GLU

4

MET

LEU

VAL

GLY

GLU

GLN

ARG

VAL

ILE

5

GLN

GLY

ARG

ASP

GLY

LEU

ARG

HIS

VAL

6

PHE

GLU

VAL

ASP

GLU

ASN

GLY

GLN

ARG

7

LEU

ARG

SER

THR

GLU

VAL

ILE

GLN

GLU

ALA

8

ILE

PRO

GLU

ILE

VAL

GLU

ILE

GLY

THR

LYS

9

VAL

Samples:

sample_1: ENDD G5 domain, [U-13C; U-15N; U-2H], 0.420 mM

sample_conditions_1: ionic strength: 0.15 M; pH: 6.5; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1

Software:

SPARKY, Goddard - chemical shift assignment

NMR spectrometers:

Bruker Avance 800 MHz

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks