BMRB Entry 27828
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR27828
NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
XML gzip file.
RDF gzip file.
All files associated with the entry
Citation: Laskowski, Tomasz; Andralojc, Witold; Grynda, Jakub; Gwarda, Paulina; Mazerski, Jan; Gdaniec, Zofia. "A strong preference for the TA/TA dinucleotide step discovered for an
acridine-based, potent antitumor dsDNA intercalator, C-1305: NMR-driven
structural and sequence-specificity studies" Sci. Rep. 10, 11697-11697 (2020).
PubMed: 32678133
Assembly members:
d(CGATATCG)2, polymer, 8 residues, Formula weight is not available
Natural source: Common Name: not available Taxonomy ID: not available Superkingdom: not available Kingdom: not available Genus/species: not available not available
Experimental source: Production method: chemical synthesis
Entity Sequences (FASTA):
d(CGATATCG)2: CGATATCG
- assigned_chemical_shifts
| Data type | Count |
| 1H chemical shifts | 50 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | DNA d(CGATATCG)2, chain A | 1 |
| 2 | DNA d(CGATATCG)2, chain B | 1 |
Entities:
Entity 1, DNA d(CGATATCG)2, chain A 8 residues - Formula weight is not available
| 1 | DC | DG | DA | DT | DA | DT | DC | DG |
Samples:
free_DNA: d(CGATATCG)2 1.25 mM; cacodylate 2.5 mM; sodium chloride 10 mM
sample_conditions_1: ionic strength: 0.01 M; pH: 5.0; pressure: 1 atm; temperature: 278 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 2D 1H-1H NOESY | free_DNA | isotropic | sample_conditions_1 |
Software:
SPARKY v3.13, Goddard - chemical shift assignment
NMR spectrometers:
- Bruker Avance 700 MHz