BMRB Entry 27473

Name: NMR Parameters for the Short Isoform of Hypogastrura harveyi &quot;snow flea&quot; Antifreeze Protein
Published: 2018-11-16

Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR27473

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

NMR Parameters for the Short Isoform of Hypogastrura harveyi "snow flea" Antifreeze Protein

Deposition date:

2018-05-05

Original release date:

2018-11-16

Authors:

Laurents, Douglas; Trevino, Miguel; Mompean, Miguel; Pantoja, David

Citation:

Citation: Trevino, Miguel Angel; Pantoja-Uceda, David; Menendez, Margarita; Gomez, M Victoria; Mompean, Miguel; Laurents, Douglas. "The Singular NMR Fingerprint of a Polyproline II Helical Bundle." J. Am. Chem. Soc. 140, 16988-17000 (2018).
PubMed: 30430829

Assembly members:

Assembly members:
sfAFP, polymer, 81 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Hypogastrura harveyi Taxonomy ID: 351090 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Hypogastrura harveyi

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: PET45b+

Entity Sequences (FASTA):

Entity Sequences (FASTA):
sfAFP: CKGADGAHGVNGCPGTAGAA GSVGGPGCDGGHGGNGGNGN PGCAGGVGGAGGASGGTGVG GRGGKGGSGTPKGADGAPGA P

Data sets:

H_exch_rates
- H_exch_rate_list_1
assigned_chemical_shifts
- assigned_chem_shift_list_1
coupling_constants
- coupling_constant_list_1
heteronucl_NOEs
- heteronuclear_noe_list_1

Data type	Count
13C chemical shifts	196
15N chemical shifts	72
1H chemical shifts	186
H exchange rates	41
coupling constants	64
heteronuclear NOE values	59

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Hypogastrura harveyi Antifreeze Protein	1

Entities:

Entity 1, Hypogastrura harveyi Antifreeze Protein 81 residues - Formula weight is not available

1

CYS

LYS

GLY

ALA

ASP

GLY

ALA

HIS

GLY

VAL

2

ASN

GLY

CYS

PRO

GLY

THR

ALA

GLY

ALA

3

GLY

SER

VAL

GLY

PRO

GLY

CYS

ASP

GLY

4

GLY

HIS

GLY

ASN

GLY

ASN

GLY

ASN

5

PRO

GLY

CYS

ALA

GLY

VAL

GLY

ALA

6

GLY

ALA

SER

GLY

THR

GLY

VAL

GLY

7

GLY

ARG

GLY

LYS

GLY

SER

GLY

THR

8

PRO

LYS

GLY

ALA

ASP

GLY

ALA

PRO

GLY

ALA

9

PRO

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_2
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_3
2D 1H-13C HSQC aliphatic	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC aliphatic	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC aliphatic	sample_3	isotropic	sample_conditions_3
3D CBCA(CO)NH	sample_1	isotropic	sample_conditions_1
3D HNCO	sample_1	isotropic	sample_conditions_1
3D HNCA	sample_1	isotropic	sample_conditions_1
3D HNHA	sample_1	isotropic	sample_conditions_3
3D HN(CO)CA	sample_1	isotropic	sample_conditions_1
3D HNHA	sample_1	isotropic	sample_conditions_3
3D 1H-15N NOESY	sample_1	isotropic	sample_conditions_1

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks

BMRB Entry 27473

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers: