BMRB Entry 27407

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR27407

NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
XML gzip file.
RDF gzip file.
All files associated with the entry

Title:
Ile and Met methyl 1H and 13C chemical shifts of DNA polymerase beta
Deposition date:
2018-02-20
Original release date:
2018-06-20
Authors:
DeRose, Eugene; Kirby, Thomas; Mueller, Geoffrey; Beard, William; Wilson, Samuel; London, Robert
Citation:

Citation: DeRose, Eugene; Kirby, Thomas; Mueller, Geoffrey; Beard, William; Wilson, Samuel; London, Robert. "Transitions in DNA polymerase beta microsecond-millisecond dynamics related to substrate binding and catalysis"  Nucleic Acids Res. 46, 7309-7322 (2018).
PubMed: 29917149

Assembly members:

Assembly members:
DNA_polymerase_beta_polypeptide, polymer, 335 residues, Formula weight is not available

Natural source:

Natural source:   Common Name: Rat   Taxonomy ID: 10116   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Rattus norvegicus

Experimental source:

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli   Vector: pET30

Entity Sequences (FASTA):

Entity Sequences (FASTA):
DNA_polymerase_beta_polypeptide: MSKRKAPQETLNGGITDMLV ELANFEKNVSQAIHKYNAYR KAASVIAKYPHKIKSGAEAK KLPGVGTKIAEKIDEFLATG KLRKLEKIRQDDTSSSINFL TRVTGIGPSAARKLVDEGIK TLEDLRKNEDKLNHHQRIGL KYFEDFEKRIPREEMLQMQD IVLNEVKKLDPEYIATVCGS FRRGAESSGDMDVLLTHPNF TSESSKQPKLLHRVVEQLQK VRFITDTLSKGETKFMGVCQ LPSENDENEYPHRRIDIRLI PKDQYYAGVLYFTGSDIFNK NMRAHALEKGFTINEYTIRP LGVTGVAGEPLPVDSEQDIF DYIQWRYREPKDRSE

Data sets:
Data typeCount
13C chemical shifts29
1H chemical shifts87

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1DNA polymerase beta1

Entities:

Entity 1, DNA polymerase beta 335 residues - Formula weight is not available

1   METSERLYSARGLYSALAPROGLNGLUTHR
2   LEUASNGLYGLYILETHRASPMETLEUVAL
3   GLULEUALAASNPHEGLULYSASNVALSER
4   GLNALAILEHISLYSTYRASNALATYRARG
5   LYSALAALASERVALILEALALYSTYRPRO
6   HISLYSILELYSSERGLYALAGLUALALYS
7   LYSLEUPROGLYVALGLYTHRLYSILEALA
8   GLULYSILEASPGLUPHELEUALATHRGLY
9   LYSLEUARGLYSLEUGLULYSILEARGGLN
10   ASPASPTHRSERSERSERILEASNPHELEU
11   THRARGVALTHRGLYILEGLYPROSERALA
12   ALAARGLYSLEUVALASPGLUGLYILELYS
13   THRLEUGLUASPLEUARGLYSASNGLUASP
14   LYSLEUASNHISHISGLNARGILEGLYLEU
15   LYSTYRPHEGLUASPPHEGLULYSARGILE
16   PROARGGLUGLUMETLEUGLNMETGLNASP
17   ILEVALLEUASNGLUVALLYSLYSLEUASP
18   PROGLUTYRILEALATHRVALCYSGLYSER
19   PHEARGARGGLYALAGLUSERSERGLYASP
20   METASPVALLEULEUTHRHISPROASNPHE
21   THRSERGLUSERSERLYSGLNPROLYSLEU
22   LEUHISARGVALVALGLUGLNLEUGLNLYS
23   VALARGPHEILETHRASPTHRLEUSERLYS
24   GLYGLUTHRLYSPHEMETGLYVALCYSGLN
25   LEUPROSERGLUASNASPGLUASNGLUTYR
26   PROHISARGARGILEASPILEARGLEUILE
27   PROLYSASPGLNTYRTYRALAGLYVALLEU
28   TYRPHETHRGLYSERASPILEPHEASNLYS
29   ASNMETARGALAHISALALEUGLULYSGLY
30   PHETHRILEASNGLUTYRTHRILEARGPRO
31   LEUGLYVALTHRGLYVALALAGLYGLUPRO
32   LEUPROVALASPSERGLUGLNASPILEPHE
33   ASPTYRILEGLNTRPARGTYRARGGLUPRO
34   LYSASPARGSERGLU

Samples:

sample_1: DNA polymerase beta polypeptide, Ile CD1-[13CH3], Leu,Val-[13CH3,12CD3], Met-[13CH3], [U-15N; U-2H], 140 uM; potassium chloride 150 mM; TRIS, [U-100% 2H], 50 mM; CDTA 1 mM; DTT 1 mM; AEBSF protease inhibitor 0.1 mM; sodium azide 0.04%; DSS 50 uM

sample_2: DNA polymerase beta polypeptide, Ile CD1-[13CH3], Leu,Val-[13CH3,12CD3], Met-[13CH3], [U-13C;U-15N; U-2H], 300 uM; potassium chloride 150 mM; TRIS, [U-100% 2H], 50 mM; CDTA 1 mM; DTT 1 mM; AEBSF protease inhibitor 0.1 mM; sodium azide 0.04%; DSS 50 uM

sample_conditions_1: ionic strength: 150 mM; pH: 7.6; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-13C HMQC methylsample_1isotropicsample_conditions_1
2D 1H-13C HMQC methylsample_1isotropicsample_conditions_1
(4D) methyl 1H-13C-13C-1H NOESY/3D F2F3F4 cubesample_1isotropicsample_conditions_1
3D HMCM[CG]CBCAsample_2isotropicsample_conditions_1

Software:

VNMRJ v4.2, Agilent - collection

NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

NMRView, Johnson, One Moon Scientific - chemical shift assignment

NMR spectrometers:

  • Agilent DD2 800 MHz
  • Agilent DD2 600 MHz