BMRB Entry 27347

Name: Babckbone 1HN, 13C, and 15N Chemical Shift Assignments of the ATAD2B Bromodomain
Published: 2021-07-22

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR27347

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Babckbone 1HN, 13C, and 15N Chemical Shift Assignments of the ATAD2B Bromodomain

Deposition date:

2017-12-21

Original release date:

2021-07-22

Authors:

Cornilescu, Gabriel

Citation:

Citation: Lloyd, Jonathan; McLaughlin, Kyle; Lubula, Mulu; Gay, Jamie; Dest, Andrea; Gao, Cong; Phillips, Margaret; Tonelli, Marco; Cornilescu, Gabriel; Marunde, Matthew; Evans, Chiara; Boyson, Samuel; Carlson, Samuel; Keogh, Michael-Christopher; Markley, John; Frietze, Seth; Glass, Karen. "Structural Insights into the Recognition of Mono- and Diacetylated Histones by the ATAD2B Bromodomain" J. Med. Chem. 63, 12799-12813 (2020).
PubMed: 33084328

Assembly members:

Assembly members:
ATAD2B_bromodomain, polymer, 136 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pDEST15

Entity Sequences (FASTA):

Entity Sequences (FASTA):
ATAD2B_bromodomain: GPLEDQEENTLRELRLFLRD VTKRLATDKRFNIFSKPVDI EEVSDYLEVIKEPMDLSTVI TKIDKHNYLTAKDFLKDIDL ICSNALEYNPDKDPGDKIIR HRACTLKDTAHAIIAAELDP EFNKLCEEIKEARIKR

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	225
15N chemical shifts	118
1H chemical shifts	118

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	ATAD2B bromodomain	1

Entities:

Entity 1, ATAD2B bromodomain 136 residues - Formula weight is not available

1

GLY

PRO

LEU

GLU

ASP

GLN

GLU

ASN

THR

2

LEU

ARG

GLU

LEU

ARG

LEU

PHE

LEU

ARG

ASP

3

VAL

THR

LYS

ARG

LEU

ALA

THR

ASP

LYS

ARG

4

PHE

ASN

ILE

PHE

SER

LYS

PRO

VAL

ASP

ILE

5

GLU

VAL

SER

ASP

TYR

LEU

GLU

VAL

ILE

6

LYS

GLU

PRO

MET

ASP

LEU

SER

THR

VAL

ILE

7

THR

LYS

ILE

ASP

LYS

HIS

ASN

TYR

LEU

THR

8

ALA

LYS

ASP

PHE

LEU

LYS

ASP

ILE

ASP

LEU

9

ILE

CYS

SER

ASN

ALA

LEU

GLU

TYR

ASN

PRO

10

ASP

LYS

ASP

PRO

GLY

ASP

LYS

ILE

ARG

11

HIS

ARG

ALA

CYS

THR

LEU

LYS

ASP

THR

ALA

12

HIS

ALA

ILE

ALA

GLU

LEU

ASP

PRO

13

GLU

PHE

ASN

LYS

LEU

CYS

GLU

ILE

LYS

14

GLU

ALA

ARG

ILE

LYS

ARG

Samples:

sample_1: ATAD2B bromodomain, [U-99% 13C; U-99% 15N], 1 mM

sample_conditions_1: ionic strength: 0.15 M; pH: 6.8; pressure: 1 atm; temperature: 273 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_1	isotropic	sample_conditions_1
3D HNCA	sample_1	isotropic	sample_conditions_1
3D HNCACB	sample_1	isotropic	sample_conditions_1

Software:

SPARKY, Goddard - chemical shift assignment

NMR spectrometers:

Agilent INOVA 600 MHz

UNP	Q9ULI0
AlphaFold	Q8N9E7