BMRB Entry 27208

Name: Fc fragment of mouse immunoglobulin G
Published: 2017-10-18

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR27208

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Fc fragment of mouse immunoglobulin G

Deposition date:

2017-08-07

Original release date:

2017-10-18

Authors:

Yanaka, Saeko; Yamazaki, Toshio; Yogo, Rina; Yagi, Hirokazu; Kato, Koichi

Citation:

Citation: Yanaka, Saeko; Yamazaki, Toshio; Yogo, Rina; Noda, Masanori; Uchiyama, Susumu; Yagi, Hirokazu; Kato, Koichi. "NMR Detection of Semi-Specific Antibody Interactions in Serum Environments." Molecules 22, E1619-E1619 (2017).
PubMed: 28953258

Assembly members:

Assembly members:
Fc_fragment_of_mouse_immunoglobulin_G, polymer, 219 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Mouse Taxonomy ID: 10090 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Mus musculus

Experimental source:

Experimental source: Production method: recombinant technology Host organism: mouse cell line Vector: not applicable

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Fc_fragment_of_mouse_immunoglobulin_G: CPAPNLEGGPSVFIFPPNIK DVLMISLTPKVTCVVVDVSE DDPDVQISWFVNNVEVHTAQ TQTHREDYNSTIRVVSTLPI QHQDWMSGKEFKCKVNNKDL PSPIERTISKIKGLVRAPQV YILPPPAEQLSRKDVSLTCL VVGFNPGDISVEWTSNGHTE ENYKDTAPVLDSDGSYFIYS KLNMKTSKWEKTDSFSCNVR HEGLKNYYLKKTISRSPGK

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	425
15N chemical shifts	197
1H chemical shifts	197

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Fc fragment of mouse immunoglobulin G	1

Entities:

Entity 1, Fc fragment of mouse immunoglobulin G 219 residues - Formula weight is not available

1

CYS

PRO

ALA

PRO

ASN

LEU

GLU

GLY

PRO

2

SER

VAL

PHE

ILE

PHE

PRO

ASN

ILE

LYS

3

ASP

VAL

LEU

MET

ILE

SER

LEU

THR

PRO

LYS

4

VAL

THR

CYS

VAL

ASP

VAL

SER

GLU

5

ASP

PRO

ASP

VAL

GLN

ILE

SER

TRP

PHE

6

VAL

ASN

VAL

GLU

VAL

HIS

THR

ALA

GLN

7

THR

GLN

THR

HIS

ARG

GLU

ASP

TYR

ASN

SER

8

THR

ILE

ARG

VAL

SER

THR

LEU

PRO

ILE

9

GLN

HIS

GLN

ASP

TRP

MET

SER

GLY

LYS

GLU

10

PHE

LYS

CYS

LYS

VAL

ASN

LYS

ASP

LEU

11

PRO

SER

PRO

ILE

GLU

ARG

THR

ILE

SER

LYS

12

ILE

LYS

GLY

LEU

VAL

ARG

ALA

PRO

GLN

VAL

13

TYR

ILE

LEU

PRO

ALA

GLU

GLN

LEU

14

SER

ARG

LYS

ASP

VAL

SER

LEU

THR

CYS

LEU

15

VAL

GLY

PHE

ASN

PRO

GLY

ASP

ILE

SER

16

VAL

GLU

TRP

THR

SER

ASN

GLY

HIS

THR

GLU

17

GLU

ASN

TYR

LYS

ASP

THR

ALA

PRO

VAL

LEU

18

ASP

SER

ASP

GLY

SER

TYR

PHE

ILE

TYR

SER

19

LYS

LEU

ASN

MET

LYS

THR

SER

LYS

TRP

GLU

20

LYS

THR

ASP

SER

PHE

SER

CYS

ASN

VAL

ARG

21

HIS

GLU

GLY

LEU

LYS

ASN

TYR

LEU

LYS

22

LYS

THR

ILE

SER

ARG

SER

PRO

GLY

LYS

Samples:

sample_1: Fc fragment of mouse immunoglobulin G, [U-13C; U-15N], 10.4 mg/mL

sample_conditions_1: ionic strength: 50 mM; pH: 6.0; pressure: 1 atm; temperature: 325 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
3D HNCO	sample_1	isotropic	sample_conditions_1
3D HCACO	sample_1	isotropic	sample_conditions_1
3D HNCA	sample_1	isotropic	sample_conditions_1
3D HN(CO)CA	sample_1	isotropic	sample_conditions_1

Software:

NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - chemical shift assignment

NMR spectrometers:

Bruker Avance 800 MHz
Bruker Avance 900 MHz
Bruker DRX 400 MHz
Bruker DMX 500 MHz

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks