BMRB Entry 26790

Name: 1H Chemical Shift Assignments for AvBD7
Published: 2017-03-02

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR26790

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

1H Chemical Shift Assignments for AvBD7

Deposition date:

2016-05-03

Original release date:

2017-03-02

Authors:

Landon, Celine; Meudal, Herve

Citation:

Citation: Bailleul, Geoffrey; Kravtzoff, Amanda; Joulin-Giet, Alix; Lecaille, Fabien; Labas, Valerie; Meudal, Herve; Loth, Karine; Teixeira-Gomes, Ana-Paula; Gilbert, Florence; Coquet, Laurent; Jouenne, Thierry; Bromme, Dieter; Schouler, Catherine; Landon, Celine; Lalmanach, Gilles; Lalmanach, Anne-Christine. "The Unusual Resistance of Avian Defensin AvBD7 to Proteolytic Enzymes Preserves Its Antibacterial Activity" PLoS ONE 11, e0161573-e0161573 (2016).
PubMed: 27561012

Assembly members:

Assembly members:
AvBD7, polymer, 47 residues, Formula weight is not available

Natural source:

Natural source: Common Name: chicken Taxonomy ID: 9031 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Gallus gallus

Experimental source:

Experimental source: Production method: extracted Host organism: Gallus gallus

Entity Sequences (FASTA):

Entity Sequences (FASTA):
AvBD7: XPFIPRPIDTCRLRNGICFP GICRRPYYWIGTCNNGIGSC CARGWRS

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
1H chemical shifts	323

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	AvBD7	1

Entities:

Entity 1, AvBD7 47 residues - Formula weight is not available

1

PCA

PRO

PHE

ILE

PRO

ARG

PRO

ILE

ASP

THR

2

CYS

ARG

LEU

ARG

ASN

GLY

ILE

CYS

PHE

PRO

3

GLY

ILE

CYS

ARG

PRO

TYR

TRP

ILE

4

GLY

THR

CYS

ASN

GLY

ILE

GLY

SER

CYS

5

CYS

ALA

ARG

GLY

TRP

ARG

SER

Samples:

sample_1: AvBD7 0.23 mM; H2O 90%; D2O 10%

sample_2: AvBD7 0.23 mM; D2O 100%

sample_conditions_1: pH: 4.5; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-1H TOCSY	sample_1	isotropic	sample_conditions_1
2D 1H-1H NOESY	sample_1	isotropic	sample_conditions_1
2D DQF-COSY	sample_1	isotropic	sample_conditions_1

Software:

TOPSPIN, Bruker Biospin - collection, processing

Ccpnmr, CCPN - chemical shift assignment

NMR spectrometers:

Bruker Avance 950 MHz