BMRB Entry 26772

Name: Chemical shift assignments of PfEMP1 ATSCore - variant PFF0845c
Published: 2017-08-01

Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR26772

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Chemical shift assignments of PfEMP1 ATSCore - variant PFF0845c

Deposition date:

2016-04-01

Original release date:

2017-08-01

Authors:

Cutts, Erin; Vakonakis, Ioannis

Citation:

Citation: Cutts, Erin; Laasch, Niklas; Reiter, Dirk; Trenker, Raphael; Slater, Leanne; Stansfeld, Phillip; Vakonakis, Ioannis. "Structural analysis of P. falciparum KAHRP and PfEMP1 complexes with host erythrocyte spectrin suggests a model for cytoadherent knob protrusions" PLoS Pathog. 13, e1006552-e1006552 (2017).
PubMed: 28806784

Assembly members:

Assembly members:
Core8, polymer, 83 residues, Formula weight is not available

Natural source:

Natural source: Common Name: malaria parasite P. falciparum Taxonomy ID: 5833 Superkingdom: Eukaryota Kingdom: not available Genus/species: Plasmodium falciparum

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET16c

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Core8: GPLGSTNKFTDNEWNQLKQD FISNISQNSQMDLVAKQTHN DPIVNQINLFHKWLDRHRNM CEQWDKNKKEELLDKLNEEW NKE

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	242
15N chemical shifts	80
1H chemical shifts	80

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Core8	1

Entities:

Entity 1, Core8 83 residues - Formula weight is not available

Residues 1-5 represent a cloning artefact This domain construct excludes a large flexible linker present in the WT molecule

1

GLY

PRO

LEU

GLY

SER

THR

ASN

LYS

PHE

THR

2

ASP

ASN

GLU

TRP

ASN

GLN

LEU

LYS

GLN

ASP

3

PHE

ILE

SER

ASN

ILE

SER

GLN

ASN

SER

GLN

4

MET

ASP

LEU

VAL

ALA

LYS

GLN

THR

HIS

ASN

5

ASP

PRO

ILE

VAL

ASN

GLN

ILE

ASN

LEU

PHE

6

HIS

LYS

TRP

LEU

ASP

ARG

HIS

ARG

ASN

MET

7

CYS

GLU

GLN

TRP

ASP

LYS

ASN

LYS

GLU

8

GLU

LEU

ASP

LYS

LEU

ASN

GLU

TRP

9

ASN

LYS

GLU

Samples:

sample_1: Core8, [U-99% 13C; U-99% 15N], 0.95 mM; sodium chloride 300 mM; sodium phosphate 20 mM; DTT 1 mM; DSS 0.05 mM; H2O 95%; D2O 5%

sample_conditions_1: ionic strength: 0.34 M; pH: 6.5; pressure: 1 atm; temperature: 303 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_1	isotropic	sample_conditions_1
3D HNCACB	sample_1	isotropic	sample_conditions_1
3D HNCO	sample_1	isotropic	sample_conditions_1
3D HN(CA)CO	sample_1	isotropic	sample_conditions_1

Software:

TOPSPIN, Bruker Biospin - collection

NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

CCPN_Analysis, Prof. Geerten Vuister - data analysis

NMR spectrometers:

Bruker Avance 750 MHz

UNP	C6KT15
AlphaFold	C6KT15