BMRB Entry 26734

Name: D53S/D55S variant of Penicillium Antifungal Protein, PAF
Published: 2017-08-24

Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR26734

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

D53S/D55S variant of Penicillium Antifungal Protein, PAF

Deposition date:

2016-01-18

Original release date:

2017-08-24

Authors:

Fizil, Adam; Batta, Gyula

Citation:

Citation: Sonderegger, Christoph; Fizil, Adam; Burtscher, Laura; Komaromi, Istvan; Czajlik, Andras; Munoz, Alberto; Hegedus, Nikoletta; Read, Nick; Batta, Gyula; Marx, Florentine. "D19S Mutation of the Cationic, Cysteine-Rich Protein PAF: Novel Insights into Its Structural Dynamics, Thermal Unfolding and Antifungal Function" Plos One 12, e0169920-e0169920 (2017).
PubMed: 28072824

Assembly members:

Assembly members:
Penicillium_Antifungal_Protein_D53S/D55S, polymer, 55 residues, Formula weight is not available

Natural source:

Natural source: Common Name: ascomycetes Taxonomy ID: 5076 Superkingdom: Eukaryota Kingdom: Fungi Genus/species: Penicillium chrisogenum

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Penicillium chrisogenum Vector: pSK275

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Penicillium_Antifungal_Protein_D53S/D55S: AKYTGKCTKSKNECKYKNDA GKDTFIKCPKFDNKKCTKDN NKCTVDTYNNAVSCS

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	103
15N chemical shifts	54
1H chemical shifts	253

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	PAF D53S-D55S	1

Entities:

Entity 1, PAF D53S-D55S 55 residues - Formula weight is not available

1

ALA

LYS

TYR

THR

GLY

LYS

CYS

THR

LYS

SER

2

LYS

ASN

GLU

CYS

LYS

TYR

LYS

ASN

ASP

ALA

3

GLY

LYS

ASP

THR

PHE

ILE

LYS

CYS

PRO

LYS

4

PHE

ASP

ASN

LYS

CYS

THR

LYS

ASP

ASN

5

ASN

LYS

CYS

THR

VAL

ASP

THR

TYR

ASN

6

ALA

VAL

SER

CYS

SER

Samples:

sample_1: Penicillium Antifungal Protein D53S/D55S, [U-100% 15N], 0.7 mM; D2O, [U-2H], 5%; H2O 95%; potassium phosphate 0.1 mM; sodium azide 0.04%; sodium chloride 40 mM

sample_conditions_1: ionic strength: 20 mM; pH: 5.8; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC	sample_1	isotropic	sample_conditions_1
3D 1H-15N TOCSY	sample_1	isotropic	sample_conditions_1
3D 1H-15N NOESY	sample_1	isotropic	sample_conditions_1
2D 1H-1H NOESY	sample_1	isotropic	sample_conditions_1
3D HNHA	sample_1	isotropic	sample_conditions_1

Software:

TOPSPIN v2.1, Bruker Biospin - collection, processing

CARA v1.9, Keller and Wuthrich - chemical shift assignment, data analysis, peak picking

NMR spectrometers:

Bruker Avance 500 MHz

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks