BMRB Entry 26650

Name: SIX3_HD
Published: 2015-11-04

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR26650

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

SIX3_HD

Deposition date:

2015-09-07

Original release date:

2015-11-04

Authors:

Sharma, Shrikant

Citation:

Citation: AMPAPATHI, RAVI; Sharma, Shrikant. "Structural Studies of SIX3-HD and Rhodospin" .

Assembly members:

Assembly members:
SIX3_HD, polymer, 60 residues, Formula weight is not available

Natural source:

Natural source: Common Name: enterobacteria Taxonomy ID: 469008 Superkingdom: Bacteria Kingdom: not available Genus/species: Escherichia coli

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET-28a

Entity Sequences (FASTA):

Entity Sequences (FASTA):
SIX3_HD: DGEQKTHCFKERTRSLLREW YLQDPYPNPSKKRELAQATG LTPTQVGNWFKNRRQRDRAA

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	260
15N chemical shifts	62
1H chemical shifts	419

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	SIX3_HD	1

Entities:

Entity 1, SIX3_HD 60 residues - Formula weight is not available

1	ASP	GLY	GLU	GLN	LYS	THR	HIS	CYS	PHE	LYS
2	GLU	ARG	THR	ARG	SER	LEU	LEU	ARG	GLU	TRP
3	TYR	LEU	GLN	ASP	PRO	TYR	PRO	ASN	PRO	SER
4	LYS	LYS	ARG	GLU	LEU	ALA	GLN	ALA	THR	GLY
5	LEU	THR	PRO	THR	GLN	VAL	GLY	ASN	TRP	PHE
6	LYS	ASN	ARG	ARG	GLN	ARG	ASP	ARG	ALA	ALA

Samples:

sample_1: SIX3_HD, [U-100% 13C; U-100% 15N], 0.9 mM; sodium phosphate 50 mM; sodium chloride 150 mM; beta-mercaptoethanol 2 mM; sodium azide 1 mM; H2O 95%; D2O 5%

sample_conditions_1: ionic strength: 0.2 M; pH: 7.5; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC aliphatic	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC aromatic	sample_1	isotropic	sample_conditions_1
3D HNCACB	sample_1	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_1	isotropic	sample_conditions_1
3D HNCO	sample_1	isotropic	sample_conditions_1
3D C(CO)NH	sample_1	isotropic	sample_conditions_1
3D H(CCO)NH	sample_1	isotropic	sample_conditions_1

Software:

NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

SPARKY, Goddard - chemical shift assignment, data analysis

NMR spectrometers:

Agilent DD2 700 MHz

DBJ	BAA11822 BAA11823 BAA31752 BAA94484 BAA94485
EMBL	CAA09773 CAA09774 CAA09775 CAA62379 CAA75380
GB	AAC27448 AAC27449 AAC33850 AAC33851 AAD11939
PIR	S74256
REF	NP_001018421 NP_001079171 NP_001081933 NP_001093696 NP_001101502
SP	O42406 O93307 O95343 O95475 Q62233
TPG	DAA24767
AlphaFold	O42406 O93307 O95343 O95475 Q62233

1	ASP	GLY	GLU	GLN	LYS	THR	HIS	CYS	PHE	LYS
2	GLU	ARG	THR	ARG	SER	LEU	LEU	ARG	GLU	TRP
3	TYR	LEU	GLN	ASP	PRO	TYR	PRO	ASN	PRO	SER
4	LYS	LYS	ARG	GLU	LEU	ALA	GLN	ALA	THR	GLY
5	LEU	THR	PRO	THR	GLN	VAL	GLY	ASN	TRP	PHE
6	LYS	ASN	ARG	ARG	GLN	ARG	ASP	ARG	ALA	ALA

1	ASP	GLY	GLU	GLN	LYS	THR	HIS	CYS	PHE	LYS
2	GLU	ARG	THR	ARG	SER	LEU	LEU	ARG	GLU	TRP
3	TYR	LEU	GLN	ASP	PRO	TYR	PRO	ASN	PRO	SER
4	LYS	LYS	ARG	GLU	LEU	ALA	GLN	ALA	THR	GLY
5	LEU	THR	PRO	THR	GLN	VAL	GLY	ASN	TRP	PHE
6	LYS	ASN	ARG	ARG	GLN	ARG	ASP	ARG	ALA	ALA