BMRB Entry 26520

Name: Studying Invisible Excited Protein States in Slow Exchange with a Major State Conformation
Published: 2015-03-09

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR26520

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Studying Invisible Excited Protein States in Slow Exchange with a Major State Conformation

Deposition date:

2015-02-24

Original release date:

2015-03-09

Authors:

Vallurupalli, Pramodh; Bouvignies, Guillaume; Kay, Lewis

Citation:

Citation: Vallurupalli, Pramodh; Bouvignies, Guillaume; Kay, Lewis. "Studying Invisible Excited Protein States in Slow Exchange with a Major State Conformation" J. Am. Chem. Soc. 134, 8148-8161 (2012).
PubMed: 22554188

Assembly members:

Assembly members:
A39G_FF, polymer, 71 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pRSET

Entity Sequences (FASTA):

Entity Sequences (FASTA):
A39G_FF: ESQPAKKTYTWNTKEEAKQA FKELLKEKRVPSNASWEQAM KMIINDPRYSALAKLSEKKQ AFNAYKVQTEK

Data sets:

heteronucl_T1_relaxation
- heteronuclear_T1_list_1
heteronucl_T2_relaxation
- heteronuclear_T2_list_Ground
- heteronuclear_T2_list_Excited

Data type	Count
T1 relaxation values	65
T2 relaxation values	130

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	A39G FF domain	1

Entities:

Entity 1, A39G FF domain 71 residues - Formula weight is not available

1

GLU

SER

GLN

PRO

ALA

LYS

THR

TYR

THR

2

TRP

ASN

THR

LYS

GLU

ALA

LYS

GLN

ALA

3

PHE

LYS

GLU

LEU

LYS

GLU

LYS

ARG

VAL

4

PRO

SER

ASN

ALA

SER

TRP

GLU

GLN

ALA

MET

5

LYS

MET

ILE

ASN

ASP

PRO

ARG

TYR

SER

6

ALA

LEU

ALA

LYS

LEU

SER

GLU

LYS

GLN

7

ALA

PHE

ASN

ALA

TYR

LYS

VAL

GLN

THR

GLU

8

LYS

Samples:

sample_1: A39G_FF, [U-100% 15N], 2 mM; sodium acetate 50 mM; NaCl 100 mM; H2O 90%; D2O 10%

sample_conditions_1: temperature: 274 K; pH: 5.7; pressure: 1 atm

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
2D 1H-15N HMQC	sample_1	isotropic	sample_conditions_1

Software:

SPARKY, Goddard - Visualization

CATIA, Bloch McConnell - data analysis

NMRpipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

NMR spectrometers:

Varian Inova 500 MHz

BMRB	17489 18010 19591
PDB	1UZC 2KZG 2L9V 2LKS
DBJ	BAB15016 BAG60744
GB	AAC27501 AAC27506 AAD39463 AAH11788 AAH29414
REF	NP_001099950 NP_001231502 NP_060362 NP_061255 XP_001365479
SP	O75400 Q9R1C7
TPG	DAA32724
AlphaFold	O75400 Q9R1C7