BMRB Entry 25866

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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR25866
MolProbity Validation Chart

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Title:
Solution Structure of the rNedd4 WW2 Domain by NMR
Deposition date:
2015-10-27
Original release date:
2016-02-22
Authors:
Spagnol, Gaelle; Kieken, Fabien; Sorgen, Paul
Citation:

Citation: Spagnol, Gaelle; Kieken, Fabien; Kopanic, Jennifer; Li, Hanjun; Zach, Sydney; Stauch, Kelly; Grosely, Rosslyn; Sorgen, Paul. "Structural Studies of the Nedd4 WW Domains and their Selectivity for the Cx43 Carboxyl-terminus"  J. Biol. Chem. 291, 7637-7650 (2016).
PubMed: 26841867

Assembly members:

Assembly members:
rNedd4_WW2, polymer, 39 residues, 4436.736 Da.

Natural source:

Natural source:   Common Name: Rat   Taxonomy ID: 10116   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Rattus norvegicus

Experimental source:

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli   Vector: pGEX-KT

Entity Sequences (FASTA):

Entity Sequences (FASTA):
rNedd4_WW2: GSSSGLPPGWEEKQDDRGRS YYVDHNSKTTTWSKPTMED

Data sets:
Data typeCount
13C chemical shifts118
15N chemical shifts35
1H chemical shifts223

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1rNedd4 WW2 Domain1

Entities:

Entity 1, rNedd4 WW2 Domain 39 residues - 4436.736 Da.

1   GLYSERSERSERGLYLEUPROPROGLYTRP
2   GLUGLULYSGLNASPASPARGGLYARGSER
3   TYRTYRVALASPHISASNSERLYSTHRTHR
4   THRTRPSERLYSPROTHRMETGLUASP

Samples:

sample_1: rNedd4 WW2, [U-98% 13C; U-98% 15N], 1 mM; potassium phosphate 1.8 mM; DTT 1 mM; sodium chloride 137 mM; potassium chloride 2.7 mM; sodium phosphate 10 mM

sample_conditions_1: ionic strength: 156 mM; pH: 7.5; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-15N HSQCsample_1isotropicsample_conditions_1
2D 1H-13C HSQC aliphaticsample_1isotropicsample_conditions_1
3D HNHAsample_1isotropicsample_conditions_1
3D HNCACBsample_1isotropicsample_conditions_1
3D CBCA(CO)NHsample_1isotropicsample_conditions_1
3D 1H-15N NOESYsample_1isotropicsample_conditions_1
3D 1H-13C NOESY aliphaticsample_1isotropicsample_conditions_1
3D 1H-13C NOESY aromaticsample_1isotropicsample_conditions_1

Software:

ARIA v1.1, Dr. Michael Nilges, Institut Pasteur - geometry optimization, refinement, structure solution

NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

NMRView, Johnson, One Moon Scientific - chemical shift assignment, data analysis, peak picking

NMRDraw, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

NMR spectrometers:

  • Varian INOVA 600 MHz

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks