BMRB Entry 25828

Name: RIP2 CARD
Published: 2015-12-21

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PDB ID: 2n7z
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR25828
MolProbity Validation Chart

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

RIP2 CARD

Deposition date:

2015-09-28

Original release date:

2015-12-21

Authors:

LIN, ZHI; Ibanez, Carlos

Citation:

Citation: Lin, Zhi; Tann, Jason; Goh, Eddy; Kelly, Claire; Lim, Kim; Gao, Jian; Ibanez, Carlos. "Structural basis of death domain signaling in the p75 neurotrophin receptor" Elife 4, 11692-11692 (2015).
PubMed: 26646181

Assembly members:

Assembly members:
entity, polymer, 106 residues, 12116.984 Da.

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: p32a-derived

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity: GIAQQWIQSKREDIVNQMTE ACLNQSLDALLSRDLIMKED YELVSTKPTRTSKVRQLLDT TDIQGEEFAKVIVQKLKDNK QMGLQPYPEILVVSRSPSLN LLQNKS

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	372
15N chemical shifts	122
1H chemical shifts	786

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	entity	1

Entities:

Entity 1, entity 106 residues - 12116.984 Da.

1

GLY

ILE

ALA

GLN

TRP

ILE

GLN

SER

LYS

2

ARG

GLU

ASP

ILE

VAL

ASN

GLN

MET

THR

GLU

3

ALA

CYS

LEU

ASN

GLN

SER

LEU

ASP

ALA

LEU

4

LEU

SER

ARG

ASP

LEU

ILE

MET

LYS

GLU

ASP

5

TYR

GLU

LEU

VAL

SER

THR

LYS

PRO

THR

ARG

6

THR

SER

LYS

VAL

ARG

GLN

LEU

ASP

THR

7

THR

ASP

ILE

GLN

GLY

GLU

PHE

ALA

LYS

8

VAL

ILE

VAL

GLN

LYS

LEU

LYS

ASP

ASN

LYS

9

GLN

MET

GLY

LEU

GLN

PRO

TYR

PRO

GLU

ILE

10

LEU

VAL

SER

ARG

SER

PRO

SER

LEU

ASN

11

LEU

GLN

ASN

LYS

SER

Samples:

sample_1: CARD, [U-99% 13C; U-99% 15N], 0.8 mM; DTT, [U-98% 2H], 50 mM; H2O 90%; D2O 10%

sample_conditions_1: pressure: 1 atm; temperature: 301 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC aromatic	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC aliphatic	sample_1	isotropic	sample_conditions_1
3D HNCA	sample_1	isotropic	sample_conditions_1
3D HN(CO)CA	sample_1	isotropic	sample_conditions_1
3D HCCH-TOCSY	sample_1	isotropic	sample_conditions_1
4D 13C, 15N-edited NOESY	sample_1	isotropic	sample_conditions_1

Software:

NMRView, Johnson, One Moon Scientific - data analysis

CYANA, Guntert, Mumenthaler and Wuthrich - structure solution

NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

AMBER, Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman - refinement

NMR spectrometers:

Bruker Avance 800 MHz

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks