BMRB Entry 25818

Name: Structure of the transmembrane domain of human nicastrin in DPC micelles
Published: 2016-04-25

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PDB ID: 2n7r
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR25818
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Structure of the transmembrane domain of human nicastrin in DPC micelles

Deposition date:

2015-09-17

Original release date:

2016-04-25

Authors:

Li, Yan; Liew, Lynette; Li, Qingxin; Kang, CongBao

Citation:

Citation: Li, Yan; Liew, Lynette; Li, Qingxin; Kang, CongBao. "Structure of the transmembrane domain of human nicastrin-a component of -secretase" Sci. Rep. 6, 19522-19522 (2016).
PubMed: 26776682

Assembly members:

Assembly members:
transmembrane_domain_of_human_nicastrin, polymer, 54 residues, 4960.896 Da.

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET29b

Entity Sequences (FASTA):

Entity Sequences (FASTA):
transmembrane_domain_of_human_nicastrin: MAHHHHHHASKELELITLTV GFGILIFSLIVTYCINAKAD VLFIAPREPGAVSY

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	120
15N chemical shifts	45
1H chemical shifts	254

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	transmembrane_domain_of_human_nicastrin	1

Entities:

Entity 1, transmembrane_domain_of_human_nicastrin 54 residues - 4960.896 Da.

1

MET

ALA

HIS

ALA

SER

2

LYS

GLU

LEU

GLU

LEU

ILE

THR

LEU

THR

VAL

3

GLY

PHE

GLY

ILE

LEU

ILE

PHE

SER

LEU

ILE

4

VAL

THR

TYR

CYS

ILE

ASN

ALA

LYS

ALA

ASP

5

VAL

LEU

PHE

ILE

ALA

PRO

ARG

GLU

PRO

GLY

6

ALA

VAL

SER

TYR

Samples:

sample_1: transmembrane domain of human nicastrin, [U-100% 13C; U-100% 15N], 0.8 mM; sodium phosphate 20 mM; DPC 200 mM; DTT 1 mM; H2O 90%; D2O 10%

sample_conditions_1: ionic strength: 20 mM; pH: 6.5; pressure: 1 atm; temperature: 313 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
3D HNCA	sample_1	isotropic	sample_conditions_1
3D HNCACB	sample_1	isotropic	sample_conditions_1
3D HN(CO)CACB	sample_1	isotropic	sample_conditions_1
3D HNCO	sample_1	isotropic	sample_conditions_1
3D 1H-15N NOESY	sample_1	isotropic	sample_conditions_1
3D HBHA(CO)NH	sample_1	isotropic	sample_conditions_1

Software:

NMRPipe, Bruker Biospin, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax, Johnson, One Moon Scientific, Keller and Wuthrich, Schwieters, Kuszewski, Tjandra and Clore - chemical shift assignment, processing, structure solution

NMR spectrometers:

Bruker Avance 700 MHz

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks