BMRB Entry 25741

Title:
Solution NMR structure of octyl-tridecaptin A1 in DPC micelles containing Gram-negative lipid II
Deposition date:
2016-09-22
Original release date:
2016-09-22
Authors:
Cochrane, Stephen; Findlay, Brandon; Bakhtiary, Alireza; Rodriguez-Lopez, Eva; Vederas, John
Citation:

Citation: Cochrane, Stephen; Findlay, Brandon; Bakhtiary, Alireza; Acedo, Jeella; Rodriguez-Lopez, Eva; Mercier, Pascal; Vederas, John. "Antimicrobial lipopeptide tridecaptin A1 selectively binds to Gram-negative lipid II."  Proc. Natl. Acad. Sci. U.S.A. 113, 11561-11566 (2016).
PubMed: 27688760

Assembly members:

Assembly members:
entity, polymer, 13 residues, 1867.077 Da.

Natural source:

Natural source:   Common Name: Paenibacillus terrae   Taxonomy ID: 159743   Superkingdom: Bacteria   Kingdom: not available   Genus/species: Paenibacillus terrae

Experimental source:

Experimental source:   Production method: chemical synthesis   Host organism: Paenibacillus terrae

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity: XXGXXSXXFEVXA

Data sets:
Data typeCount
1H chemical shifts79

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1entity1

Entities:

Entity 1, entity 13 residues - 1867.077 Da.

1   DVA4FOGLYDSNDTRSERDAB4FOPHEGLU
2   VAL28JALA

Samples:

sample_1: entity mM; D2O 10%; H2O 90 mM; DPC 180%

sample_conditions_1: pH: 6; pressure: 1 atm; temperature: 273 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-1H TOCSYsample_1isotropicsample_conditions_1
2D 1H-1H NOESYsample_1isotropicsample_conditions_1

Software:

CYANA, G??ntert P. - refinement

NMR spectrometers:

  • Varian INOVA 600 MHz