BMRB Entry 25541

Name: Solution structure of MyUb (1080-1122) of human Myosin VI
Published: 2016-03-07

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PDB ID: 2n0z
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR25541
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of MyUb (1080-1122) of human Myosin VI

Deposition date:

2015-03-20

Original release date:

2016-03-07

Authors:

He, Fahu; Walters, Kylie

Citation:

Citation: He, Fahu; Wollscheid, Hans-Peter; Nowicka, Urszula; Biancospino, Matteo; Valentini, Eleonora; Ehlinger, Aaron; Acconcia, Filippo; Magistrati, Elisa; Polo, Simona; Walters, Kylie. "Myosin VI Contains a Compact Structural Motif that Binds to Ubiquitin Chains" Cell Rep. 14, 2683-2694 (2016).
PubMed: 26971995

Assembly members:

Assembly members:
entity, polymer, 51 residues, 5213.026 Da.

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pGEX6p

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity: GPLGSPNSGTKKYDLSKWKY AELRDTINTSCDIELLAACR EEFHRRLKVYH

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	232
15N chemical shifts	55
1H chemical shifts	364

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	entity	1

Entities:

Entity 1, entity 51 residues - 5213.026 Da.

The first 8 residues (GPLGSPNS) are a tag

1

GLY

PRO

LEU

GLY

SER

PRO

ASN

SER

GLY

THR

2

LYS

TYR

ASP

LEU

SER

LYS

TRP

LYS

TYR

3

ALA

GLU

LEU

ARG

ASP

THR

ILE

ASN

THR

SER

4

CYS

ASP

ILE

GLU

LEU

ALA

CYS

ARG

5

GLU

PHE

HIS

ARG

LEU

LYS

VAL

TYR

6

HIS

Samples:

sample_1: entity, [U-13C; U-15N], 0.3 mM; sodium phosphate buffer 20 mM; NaCl 50 mM; DTT 2 mM; NaN3 0.1%; H2O 90%; D2O 10%

sample_conditions_1: ionic strength: 50 mM; pH: 6.5; pressure: 1 atm; temperature: 283 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 1H-15N NOESY	sample_1	isotropic	sample_conditions_1
3D 1H-13C NOESY	sample_1	isotropic	sample_conditions_1

Software:

CYANA v2.1, Guntert, Mumenthaler and Wuthrich - structure solution

NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

Kujira, Naohiro Kobayashi - chemical shift assignment

X-PLOR_NIH, Schwieters, Kuszewski, Tjandra and Clore - refinement

NMR spectrometers:

Bruker Avance 700 MHz

Uniprot	Q9UM54
AlphaFold	Q9UEG2