BMRB Entry 25378

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PDB ID: 2mwz
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR25378
MolProbity Validation Chart

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Title:
A structure of G-quadruplex
Deposition date:
2014-12-04
Original release date:
2015-10-12
Authors:
Cheong, Vee Vee; Heddi, Brahim; Lech, Christopher; Phan, Anh Tuan
Citation:

Citation: Cheong, Vee Vee; Heddi, Brahim; Lech, Christopher; Phan, Anh Tuan. "Xanthine and 8-oxoguanine in G-quadruplexes: formation of a GGXO tetrad"  Nucleic Acids Res. 43, 10506-10514 (2015).
PubMed: 26400177

Assembly members:

Assembly members:
DNA_(5'-D(*TP*TP*GP*GP*GP*TP*TP*AP*(8OG)P*GP*GP*TP*TP*AP*GP*GP*(3ZO)P*TP*TP*AP*GP*GP*GP*A)-3'), polymer, 24 residues, 7259.721 Da.

Natural source:

Natural source:   Common Name: not available   Taxonomy ID: not available   Superkingdom: not available   Kingdom: not available   Genus/species: not available not available

Experimental source:

Experimental source:   Production method: chemical synthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
DNA_(5'-D(*TP*TP*GP*GP*GP*TP*TP*AP*(8OG)P*GP*GP*TP*TP*AP*GP*GP*(3ZO)P*TP*TP*AP*GP*GP*GP*A)-3'): TTGGGTTAXGGTTAGGXTTA GGGA

Data sets:
Data typeCount
1H chemical shifts232

Additional metadata:

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Assembly:

Entity Assembly IDEntity NameEntity ID
1DNA (5'-D(*TP*TP*GP*GP*GP*TP*TP*AP*(8OG)P*GP*GP*TP*TP*AP*GP*GP*(3ZO)P*TP*TP*AP*GP*GP*GP*A)-3')1

Entities:

Entity 1, DNA (5'-D(*TP*TP*GP*GP*GP*TP*TP*AP*(8OG)P*GP*GP*TP*TP*AP*GP*GP*(3ZO)P*TP*TP*AP*GP*GP*GP*A)-3') 24 residues - 7259.721 Da.

1   DTDTDGDGDGDTDTDA8OGDG
2   DGDTDTDADGDG3ZODTDTDA
3   DGDGDGDA