BMRB Entry 25352

Name: Acidocin B
Published: 2015-03-02

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PDB ID: 2mwr
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, SPARTA
BMRB Entry DOI: doi:10.13018/BMR25352
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Acidocin B

Deposition date:

2014-11-19

Original release date:

2015-03-02

Authors:

Vederas, John; Acedo, Jeella; van Belkum, Marco; Lohans, Christopher

Citation:

Citation: Acedo, Jeella; van Belkum, Marco; Lohans, Christopher; McKay, R.; Miskolzie, M.; Vederas, John. "Solution Structure of Acidocin B, a Circular Bacteriocin Produced by Lactobacillus acidophilus M46" Appl. Environ. Microbiol. 81, 2910-2918 (2015).
PubMed: 25681186

Assembly members:

Assembly members:
entity, polymer, 58 residues, 5642.548 Da.

Natural source:

Natural source: Common Name: lactic acid bacteria Taxonomy ID: 1579 Superkingdom: Bacteria Kingdom: not available Genus/species: Lactobacillus acidophilus

Experimental source:

Experimental source: Production method: purified from the natural source Host organism: Lactobacillus acidophilus

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity: IYWIADQFGIHLATGTARKL LDAVASGASLGTAFAAILGV TLPAWALAAAGALGATAA

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
1H chemical shifts	377

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	entity	1

Entities:

Entity 1, entity 58 residues - 5642.548 Da.

N- and C-termini are cyclized

1

ILE

TYR

TRP

ILE

ALA

ASP

GLN

PHE

GLY

ILE

2

HIS

LEU

ALA

THR

GLY

THR

ALA

ARG

LYS

LEU

3

LEU

ASP

ALA

VAL

ALA

SER

GLY

ALA

SER

LEU

4

GLY

THR

ALA

PHE

ALA

ILE

LEU

GLY

VAL

5

THR

LEU

PRO

ALA

TRP

ALA

LEU

ALA

6

GLY

ALA

LEU

GLY

ALA

THR

ALA

Samples:

sample_1: entity 1 mM; SDS, [U-99% 2H], 80 mM; DSS 0.5 mM; D2O 10%; H2O 90%

sample_conditions_1: ionic strength: 0 M; pH: 6; pressure: 1 atm; temperature: 273 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-1H TOCSY	sample_1	isotropic	sample_conditions_1
2D 1H-1H NOESY	sample_1	isotropic	sample_conditions_1

Software:

CYANA, Guntert, Mumenthaler and Wuthrich - structure solution

NMR spectrometers:

Agilent vNMRS 700 MHz

PDB	2MWR
DBJ	BAA22261 BAH08712
EMBL	CAA84399
GB	AJP07153
PRF	2120355B
REF	WP_012621083 YP_002474143