BMRB Entry 25349

Name: Nedd4 WW3
Published: 2016-01-25

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PDB ID: 5aht
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR25349
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3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Nedd4 WW3

Deposition date:

2014-11-17

Original release date:

2016-01-25

Authors:

Lecher, Justin; Dingley, Andrew J.; Panwalkar, Vineet

Citation:

Citation: Panwalkar, Vineet; Neudecker, Philipp; Schmitz, Michael; Lecher, Justin; Schulte, Marianne; Medini, Karima; Stoldt, Matthias; Brimble, Margaret; Willbold, Dieter; Dingley, Andrew. "The Nedd4-1 WW Domain Recognizes the PY Motif Peptide through Coupled Folding and Binding Equilibria" Biochemistry 55, 659-674 (2016).
PubMed: 26685112

Assembly members:

Assembly members:
E3_ubiquitin-protein_ligase_Nedd4, polymer, 43 residues, 4966.6205 Da.

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pGEX2TK

Entity Sequences (FASTA):

Entity Sequences (FASTA):
E3_ubiquitin-protein_ligase_Nedd4: GSMEQGFLPKGWEVRHAPNG RPFFIDHNTKTTTWEDPRLK IPA

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list

Data type	Count
13C chemical shifts	184
15N chemical shifts	44
1H chemical shifts	297

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	E3 ubiquitin-protein ligase Nedd4	1

Entities:

Entity 1, E3 ubiquitin-protein ligase Nedd4 43 residues - 4966.6205 Da.

1

GLY

SER

MET

GLU

GLN

GLY

PHE

LEU

PRO

LYS

2

GLY

TRP

GLU

VAL

ARG

HIS

ALA

PRO

ASN

GLY

3

ARG

PRO

PHE

ILE

ASP

HIS

ASN

THR

LYS

4

THR

TRP

GLU

ASP

PRO

ARG

LEU

LYS

5

ILE

PRO

ALA

Samples:

sample_1: E3 ubiquitin-protein ligase Nedd4, [U-13C; U-15N], 1.5 mM; Na2HPO4 20.0 mM; NaCl 50.0 mM; DSS 0.1 mM; H2O 90%; D2O, [U-2H], 10%

sample_conditions_1: ionic strength: 0.050 M; pH: 6.500; pressure: 1.000 atm; temperature: 298.000 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D HNCO	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC/HMQC	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC/HMQC	sample_1	isotropic	sample_conditions_1
2D 1H-15N HSQC/HMQC	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC aliphatic	sample_1	isotropic	sample_conditions_1
3D 1H-13C NOESY aromatic	sample_1	isotropic	sample_conditions_1

Software:

CcpNmr_Analysis v2.4.1, CCPN - Chemical shift assignment

NMR spectrometers:

Bruker Avance 599 MHz
Varian VNMRS 900 MHz

UniProt	P46934
AlphaFold	D6RF89