BMRB Entry 25011

Name: Cysteine Deleted Protegrin-1 (CDP-1): Anti-bacterial Activity, Outer-Membrane Disruption and Selectivity
Published: 2014-07-28

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PDB ID: 2mq4
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR25011
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Cysteine Deleted Protegrin-1 (CDP-1): Anti-bacterial Activity, Outer-Membrane Disruption and Selectivity

Deposition date:

2014-06-12

Original release date:

2014-07-28

Authors:

Mohanram, Harini; Bhattacharjya, Surajit

Citation:

Citation: Mohanram, Harini; Bhattacharjya, Surajit. "Cysteine deleted protegrin-1 (CDP-1): Anti-bacterial activity, outer-membrane disruption and selectivity." Biochim. Biophys. Acta 1840, 3006-3016 (2014).
PubMed: 24997421

Assembly members:

Assembly members:
entity, polymer, 11 residues, 1482.817 Da.

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: chemical synthesis Host organism: Escherichia coli Vector: na

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity: RLYRRRFVVGR

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
1H chemical shifts	57

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Cysteine Deleted Protegrin-1 (CDP-1): rr11	1

Entities:

Entity 1, Cysteine Deleted Protegrin-1 (CDP-1): rr11 11 residues - 1482.817 Da.

1

ARG

LEU

TYR

ARG

PHE

VAL

GLY

2

ARG

Samples:

sample_1: Cysteine Deleted Protegrin-1 (CDP-1): rr11 55.1 mM; H2O 90%; D2O 10%

sample_conditions_1: temperature: 278 K; pH: 4.5; pressure: 1 atm; ionic strength: 55.1 mM

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-1H NOESY	sample_1	isotropic	sample_conditions_1

Software:

SPARKY, Goddard - chemical shift assignment

NMR spectrometers:

Bruker DRX 600 MHz