BMRB Entry 234

Chem Shift validation: AVS_anomalous, AVS_full
BMRB Entry DOI: doi:10.13018/BMR234

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Determination of the Coordination Geometry at the Heme Iron in Three Cytochromes c from Saccharomyces cerevisiae and from Candida krusei Based on Individual 1H-NMR Assignments for Heme c and the Axially Coordinated Amino Acids

Deposition date:

1995-07-31

Original release date:

1995-07-31

Authors:

Senn, Hans; Eugster, Albert; Wuthrich, Kurt

Citation:

Citation: Senn, Hans; Eugster, Albert; Wuthrich, Kurt. "Determination of the Coordination Geometry at the Heme Iron in Three Cytochromes c from Saccharomyces cerevisiae and from Candida krusei Based on Individual 1H-NMR Assignments for Heme c and the Axially Coordinated Amino Acids" Biochim. Biophys. Acta 743, 58-68 (1983).

Assembly members:

Assembly members:
cytochrome c, polymer, 112 residues, Formula weight is not available
HEME C, non-polymer, 618.503 Da.

Natural source:

Natural source: Common Name: yeast Taxonomy ID: 4932 Superkingdom: Fungi Kingdom: Saccharomyces Genus/species: cerevisiae not available

Experimental source:

Experimental source: Production method: not available

Entity Sequences (FASTA):

Entity Sequences (FASTA):
cytochrome c: AKESTGFKPGSAKKGATLFK KRCQQCHTIEEGGPNKVGPN LHGIFGRHSGQVKGYSYYTA NINKNVKWDEDSMSEYLTNP KKYIPGTKMAFAGLKKEKDR NDLITYMTKAAK

Data sets:

assigned_chemical_shifts
- chemical_shift_assignment_data_set_one

Data type	Count
1H chemical shifts	6

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	cytochrome c	1
2	Heme C	2

Entities:

Entity 1, cytochrome c 112 residues - Formula weight is not available

1

ALA

LYS

GLU

SER

THR

GLY

PHE

LYS

PRO

GLY

2

SER

ALA

LYS

GLY

ALA

THR

LEU

PHE

LYS

3

LYS

ARG

CYS

GLN

CYS

HIS

THR

ILE

GLU

4

GLU

GLY

PRO

ASN

LYS

VAL

GLY

PRO

ASN

5

LEU

HIS

GLY

ILE

PHE

GLY

ARG

HIS

SER

GLY

6

GLN

VAL

LYS

GLY

TYR

SER

TYR

THR

ALA

7

ASN

ILE

ASN

LYS

ASN

VAL

LYS

TRP

ASP

GLU

8

ASP

SER

MET

SER

GLU

TYR

LEU

THR

ASN

PRO

9

LYS

TYR

ILE

PRO

GLY

THR

LYS

MET

ALA

10

PHE

ALA

GLY

LEU

LYS

GLU

LYS

ASP

ARG

11

ASN

ASP

LEU

ILE

THR

TYR

MET

THR

LYS

ALA

12

ALA

LYS

Entity 2, Heme C - C34 H34 Fe N4 O4 - 618.503 Da.

1

HEC

Samples:

sample_one: .

sample_condition_set_one: pH: 7.2; temperature: 293 K

Experiments:

Name	Sample	Sample state	Sample conditions
not available	sample_one	not available	sample_condition_set_one

Software:

No software information available

NMR spectrometers:

unknown unknown 0 MHz

BMRB	1416 228 2488 2489
DBJ	GAA22787
EMBL	CAA24606 CAY79121
GB	AAA34940 AAB59339 AAB65003 AAD13974 AAT93051
REF	NP_010875
SP	P00045
TPG	DAA07614
AlphaFold	P00045