BMRB Entry 20113

Name: 1H, 13C assignments and NMR structure of temporin-SHf
Published: 2010-05-19

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR20113

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

1H, 13C assignments and NMR structure of temporin-SHf

Deposition date:

2009-12-10

Original release date:

2010-05-19

Authors:

Lequin, Olivier; Goasdoue, Nicole; Abbassi, Feten; Piesse, Christophe; Foulon, Thierry; Nicolas, Pierre; Ladram, Ali

Citation:

Citation: Abbassi, Feten; Lequin, Olivier; Piesse, Christophe; Goasdoue, Nicole; Foulon, Thierry; Nicolas, Pierre; Ladram, Ali. "Temporin-SHf, a New Type of Phe-rich and Hydrophobic Ultrashort Antimicrobial Peptide." J. Biol. Chem. 285, 16880-16892 (2010).
PubMed: 20308076

Assembly members:

Assembly members:
Temporin-SHf, polymer, 8 residues, 1077.311 Da.

Natural source:

Natural source: Common Name: Sahara frog Taxonomy ID: 70019 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Pelophylax saharica

Experimental source:

Experimental source: Production method: chemical synthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Temporin-SHf: FFFLSRIX

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1
- assigned_chem_shift_list_2

Data type	Count
13C chemical shifts	53
1H chemical shifts	120

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Temporin-SHf	1

Entities:

Entity 1, Temporin-SHf 8 residues - 1077.311 Da.

1

PHE

LEU

SER

ARG

ILE

NFA

Samples:

sample_1: entity 2 mM; DSS 0.1 mM; DPC, [U-2H], 120 mM; H2O 90%; D2O 10%

sample_2: entity 1.4 mM; DSS 0.1 mM; SDS 80 mM; H2O 90%; D2O 10%

sample_conditions_1: pH: 5.4; pressure: 1 atm; temperature: 293 K

sample_conditions_2: pH: 5.4; pressure: 1 atm; temperature: 313 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-1H NOESY	sample_1	isotropic	sample_conditions_1
2D 1H-1H TOCSY	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC	sample_1	isotropic	sample_conditions_1
2D 1H-1H NOESY	sample_2	isotropic	sample_conditions_2
2D 1H-1H TOCSY	sample_2	isotropic	sample_conditions_2
2D 1H-13C HSQC	sample_2	isotropic	sample_conditions_2

Software:

TOPSPIN v2.0, Bruker Biospin - collection

XEASY, Bartels et al. - chemical shift assignment

DYANA, Guntert, Braun and Wuthrich - structure solution

X-PLOR NIH, Schwieters, Kuszewski, Tjandra and Clore - refinement

NMR spectrometers:

Bruker Avance 500 MHz