BMRB Entry 20082

Name: Apelin17 bound to SDS micelles
Published: 2009-08-04

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR20082

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Apelin17 bound to SDS micelles

Deposition date:

2009-05-04

Original release date:

2009-08-04

Authors:

Langelaan, David; Rainey, Jan

Citation:

Citation: Langelaan, David; Rainey, Jan. "Headgroup-Dependent Membrane Catalysis of Apelin-Receptor Interactions Is Likely" J. Phys. Chem. B. 113, 10465-10471 (2009).
PubMed: 19708686

Assembly members:

Assembly members:
Apelin-17, polymer, 17 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Apelin-17: KFRRQRPRLSHKGPMPF

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1
spectral_peak_list

Data type	Count
13C chemical shifts	64
15N chemical shifts	13
1H chemical shifts	146

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Apelin-17	1

Entities:

Entity 1, Apelin-17 17 residues - Formula weight is not available

1

LYS

PHE

ARG

GLN

ARG

PRO

ARG

LEU

SER

2

HIS

LYS

GLY

PRO

MET

PRO

PHE

Samples:

sample_1: Apelin-17 0.5 mM; D2O 10%; sodium acetate 20 mM; Sodium Azide 1 mM; DSS 1 mM; Sodium Dodecyl Sulfate, [U-99% 2H], 81 mM

sample_conditions_1: pH: 5.0; temperature: 308 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC	sample_1	isotropic	sample_conditions_1
2D 1H-1H TOCSY	sample_1	isotropic	sample_conditions_1
2D 1H-1H NOESY	sample_1	isotropic	sample_conditions_1

Software:

NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

SPARKY, Goddard - chemical shift assignment

X-PLOR NIH, Schwieters, Kuszewski, Tjandra and Clore - structure solution

NMR spectrometers:

Varian INOVA 800 MHz
Bruker Avance 500 MHz
Bruker Avance 700 MHz

BMRB	16275 20029 20030 20031
DBJ	BAA84974 BAA84975 BAA84976 BAA84977 BAC31156
EMBL	CAC83678
GB	AAF25814 AAF25815 AAH20015 AAH21104 AAH80843
REF	NP_001177797 NP_038940 NP_059109 NP_113800 NP_776928
SP	Q9R0R3 Q9R0R4 Q9TUI9 Q9ULZ1
TPG	DAA13389
AlphaFold	Q9R0R3 Q9R0R4 Q9TUI9 Q9ULZ1