BMRB Entry 20034

Name: Solution NMR Structure of 4F Associated With DMPC Disc
Published: 2008-10-14

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR20034

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution NMR Structure of 4F Associated With DMPC Disc

Deposition date:

2008-08-14

Original release date:

2008-10-14

Authors:

Mishra, Vinod

Citation:

Citation: Mishra, Vinod; Palgunachari, Mayakonda; Krishna, N.; Glushka, John; Segrest, Jere; Anantharamaiah, G.. "Effect of leucine to phenylalanine substitution on the nonpolar face of a class a amphipathic helical peptide on its interaction with lipid: High-resolution solution nmr studies of 4F:Dimyristoylphosphatidylcholine discoidal complex" J. Biol. Chem. 283, 34393-34402 (2008).
PubMed: 18845546

Assembly members:

Assembly members:
4F, polymer, 19 residues, Formula weight is not available

Natural source:

Natural source: Common Name: not available Taxonomy ID: not available Superkingdom: not available Kingdom: not available Genus/species: not available not available

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
4F: XDWFKAFYDKVAEKFKEAF

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
1H chemical shifts	137
conformer coordinate sets	1

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	4F Associated With DMPC Disc	1

Entities:

Entity 1, 4F Associated With DMPC Disc 19 residues - Formula weight is not available

1

ACE

ASP

TRP

PHE

LYS

ALA

PHE

TYR

ASP

LYS

2

VAL

ALA

GLU

LYS

PHE

LYS

GLU

ALA

PHE

Samples:

sample_1: sodium phosphate 5 mM

sample_conditions_1: pH: 5.5; temperature: 310 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-1H NOESY	sample_1	isotropic	sample_conditions_1
2D 1H-1H COSY	sample_1	isotropic	sample_conditions_1
2D DQF-COSY	sample_1	isotropic	sample_conditions_1
2D 1H-1H NOESY	sample_1	isotropic	sample_conditions_1
2D 1H-1H COSY	sample_1	isotropic	sample_conditions_1

Software:

X-PLOR, Brunger - geometry optimization

NMR spectrometers:

Bruker Avance 600 MHz
Varian INOVA 900 MHz