BMRB Entry 19720

Name: NMR backbone assignment of WT apo-HasAp from Pseudomonas aeruginosa
Published: 2014-04-11

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR19720

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

NMR backbone assignment of WT apo-HasAp from Pseudomonas aeruginosa

Deposition date:

2014-01-07

Original release date:

2014-04-11

Authors:

Yao, Huili; Rivera, Mario

Citation:

Citation: Kumar, Ritesh; Matsumura, Hirotoshi; Lovell, Scott; Yao, Huili; Rodriguez, Juan; Battaile, Kevin; Moenne-Loccoz, Pierre; Rivera, Mario. "Replacing the Axial Ligand Tyrosine 75 or Its Hydrogen Bond Partner Histidine 83 Minimally Affects Hemin Acquisition by the Hemophore HasAp from Pseudomonas aeruginosa." Biochemistry 53, 2112-2125 (2014).
PubMed: 24625274

Assembly members:

Assembly members:
WT_apo-HasAp, polymer, 184 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Pseudomonas aeruginosa Taxonomy ID: 287 Superkingdom: Bacteria Kingdom: not available Genus/species: Pseudomonas aeruginosa

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET 11a

Entity Sequences (FASTA):

Entity Sequences (FASTA):
WT_apo-HasAp: MSISISYSTTYSGWTVADYL ADWSAYFGDVNHRPGQVVDG SNTGGFNPGPFDGSQYALKS TASDAAFIAGGDLHYTLFSN PSHTLWGKLDSIALGDTLTG GASSGGYALDSQEVSFSNLG LDSPIAQGRDGTVHKVVYGL MSGDSSALQGQIDALLKAVD PSLSINSTFDQLAAAGVAHA TPAA

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	173
15N chemical shifts	164
1H chemical shifts	164

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
Hide all

Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	WT apo HasAp	1

Entities:

Entity 1, WT apo HasAp 184 residues - Formula weight is not available

1

MET

SER

ILE

SER

ILE

SER

TYR

SER

THR

2

TYR

SER

GLY

TRP

THR

VAL

ALA

ASP

TYR

LEU

3

ALA

ASP

TRP

SER

ALA

TYR

PHE

GLY

ASP

VAL

4

ASN

HIS

ARG

PRO

GLY

GLN

VAL

ASP

GLY

5

SER

ASN

THR

GLY

PHE

ASN

PRO

GLY

PRO

6

PHE

ASP

GLY

SER

GLN

TYR

ALA

LEU

LYS

SER

7

THR

ALA

SER

ASP

ALA

PHE

ILE

ALA

GLY

8

GLY

ASP

LEU

HIS

TYR

THR

LEU

PHE

SER

ASN

9

PRO

SER

HIS

THR

LEU

TRP

GLY

LYS

LEU

ASP

10

SER

ILE

ALA

LEU

GLY

ASP

THR

LEU

THR

GLY

11

GLY

ALA

SER

GLY

TYR

ALA

LEU

ASP

12

SER

GLN

GLU

VAL

SER

PHE

SER

ASN

LEU

GLY

13

LEU

ASP

SER

PRO

ILE

ALA

GLN

GLY

ARG

ASP

14

GLY

THR

VAL

HIS

LYS

VAL

TYR

GLY

LEU

15

MET

SER

GLY

ASP

SER

ALA

LEU

GLN

GLY

16

GLN

ILE

ASP

ALA

LEU

LYS

ALA

VAL

ASP

17

PRO

SER

LEU

SER

ILE

ASN

SER

THR

PHE

ASP

18

GLN

LEU

ALA

GLY

VAL

ALA

HIS

ALA

19

THR

PRO

ALA

Samples:

sample_1: WT apo-HasAp, [U-99% 13C; U-99% 15N], 2.5 mM; H2O 95%; D2O 5%; HPO4- 20 mM

sample_conditions_1: ionic strength: 0.12 M; pH: 7.0; pressure: 1 atm; temperature: 305 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
3D HNCA	sample_1	isotropic	sample_conditions_1
3D HN(CO)CA	sample_1	isotropic	sample_conditions_1
3D HNCACB	sample_1	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_1	isotropic	sample_conditions_1

Software:

SPARKY, Goddard - chemical shift assignment

NMRDraw, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

NMR spectrometers:

Varian INOVA 600 MHz

BMRB	15962 15963 19721 19722
PDB	3ELL 3MOK 3MOL 3MOM 3W8M 3W8O 3WAH 4O6Q 4O6S 4O6T 4O6U
DBJ	BAK91367 BAP21966 BAP49596 BAQ38483 BAR66548
EMBL	CAA76520 CAW26382 CCQ88896 CDH69922 CDH76002
GB	AAG06795 AAT49927 ABJ12662 ABR84528 AEO74046
REF	NP_252097 WP_003091842 WP_003115011 WP_003124283 WP_003153113