BMRB Entry 19677

Name: Solution structure of the CLAVATA-like encoded peptide of Meloidogyne hapla - MhCLE4
Published: 2014-12-22

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PDB ID: 2mif
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, SPARTA
BMRB Entry DOI: doi:10.13018/BMR19677
MolProbity Validation Chart

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of the CLAVATA-like encoded peptide of Meloidogyne hapla - MhCLE4

Deposition date:

2013-12-13

Original release date:

2014-12-22

Authors:

Bobay, Benjamin; DiGennaro, Peter; Bird, David

Citation:

Citation: DiGennaro, Peter; Bobay, Benjamin; Bird, David. "Inferring function of CLE peptides from high resolution tertiary structures" Proc. Natl. Acad. Sci. U.S.A. ., .-..

Assembly members:

Assembly members:
entity, polymer, 12 residues, 1222.254 Da.

Natural source:

Natural source: Common Name: nematode Taxonomy ID: 6305 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Meloidogyne hapla

Experimental source:

Experimental source: Production method: chemical synthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity: HEVPSGPNPSSN

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	23
15N chemical shifts	11
1H chemical shifts	57

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	CLAVATA-like encoded peptide of Meloidogyne hapla - MhCLE4	1

Entities:

Entity 1, CLAVATA-like encoded peptide of Meloidogyne hapla - MhCLE4 12 residues - 1222.254 Da.

1

HIS

GLU

VAL

PRO

SER

GLY

PRO

ASN

PRO

SER

2

SER

ASN

Samples:

sample_1: entity 4 mg/mL; sodium chloride 137 mM; potassium chloride 2.7 mM; sodium phosphate 10 mM; potassium phosphate 1.8 mM; H2O 90%; D2O 10%

sample_conditions_1: ionic strength: 140 mM; pH: 7.0; pressure: 1 atm; temperature: 273 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC	sample_1	isotropic	sample_conditions_1
2D 1H-1H TOCSY	sample_1	isotropic	sample_conditions_1
2D 1H-1H NOESY	sample_1	isotropic	sample_conditions_1

Software:

ARIA, Linge, O'Donoghue and Nilges - refinement, structure solution

NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

NMRView, Johnson, One Moon Scientific - chemical shift assignment, data analysis, peak picking

NMR spectrometers:

Bruker Avance 700 MHz

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks