BMRB Entry 19569

Name: NMR chemical shift assignments of mouse Vps28 C-terminal domain
Published: 2014-02-12

Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR19569

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

NMR chemical shift assignments of mouse Vps28 C-terminal domain

Deposition date:

2013-10-21

Original release date:

2014-02-12

Authors:

Peterson, Tabitha; Fowler, Andrew; Piper, Robert; Yu, Liping

Citation:

Citation: Peterson, Tabitha; Yu, Liping; Piper, Robert. "Backbone and side-chain NMR assignments for the C-terminal domain of mammalian Vps28." Biomol. NMR Assignments ., .-. (2013).
PubMed: 24366722

Assembly members:

Assembly members:
Vps28C, polymer, 105 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Mouse Taxonomy ID: 10090 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Mus musculus

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET151D

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Vps28C: GIDPFTMNLNRCIADVVSLF ITVMDKLRLEIRAMDEIQPD LRELMETMHRMSHLPPDFEG RQTVSQWLQTLSGMSASDEL DDSQVRQMLFDLESAYNAFN RFLHA

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	433
15N chemical shifts	105
1H chemical shifts	712

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Vps28C	1

Entities:

Entity 1, Vps28C 105 residues - Formula weight is not available

The N-terminal residues GIDPFTM are derived from affinity purification tag

1

GLY

ILE

ASP

PRO

PHE

THR

MET

ASN

LEU

ASN

2

ARG

CYS

ILE

ALA

ASP

VAL

SER

LEU

PHE

3

ILE

THR

VAL

MET

ASP

LYS

LEU

ARG

LEU

GLU

4

ILE

ARG

ALA

MET

ASP

GLU

ILE

GLN

PRO

ASP

5

LEU

ARG

GLU

LEU

MET

GLU

THR

MET

HIS

ARG

6

MET

SER

HIS

LEU

PRO

ASP

PHE

GLU

GLY

7

ARG

GLN

THR

VAL

SER

GLN

TRP

LEU

GLN

THR

8

LEU

SER

GLY

MET

SER

ALA

SER

ASP

GLU

LEU

9

ASP

SER

GLN

VAL

ARG

GLN

MET

LEU

PHE

10

ASP

LEU

GLU

SER

ALA

TYR

ASN

ALA

PHE

ASN

11

ARG

PHE

LEU

HIS

ALA

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
2D 1H-13C HMQC	sample_1	isotropic	sample_conditions_1
3D HNCACB	sample_1	isotropic	sample_conditions_1
3D HNCO	sample_1	isotropic	sample_conditions_1
3D HN(CO)CACB	sample_1	isotropic	sample_conditions_1
3D HN(CA)CO	sample_1	isotropic	sample_conditions_1
3D HBHA(CO)NH	sample_1	isotropic	sample_conditions_1
3D HNCA	sample_1	isotropic	sample_conditions_1
3D HN(CO)CA	sample_1	isotropic	sample_conditions_1
3D C(CO)NH	sample_1	isotropic	sample_conditions_1
3D H(CCO)NH	sample_1	isotropic	sample_conditions_1
3D HCCH-TOCSY	sample_2	isotropic	sample_conditions_1
3D 1H-15N NOESY	sample_1	isotropic	sample_conditions_1
3D 1H-15N TOCSY	sample_1	isotropic	sample_conditions_1
3D 1H-13C NOESY	sample_2	isotropic	sample_conditions_1

EMBL	Q9D1C8
DBJ	BAB22945 BAC25042
GB	AAF00499 AAH06485 AAH13535 AAH19321 AAI02079
REF	NP_001030581 NP_001123964 NP_001253325 NP_001292597 NP_057292
SP	B5DEN9 Q3T178 Q9D1C8 Q9UK41
AlphaFold	B5DEN9 Q3T178 Q9D1C8 Q9UK41

BMRB Entry 19569

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

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