BMRB Entry 19497

Name: calcium-free V6 domain of villin
Published: 2014-04-15

Chem Shift validation: AVS_anomalous, AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR19497

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

calcium-free V6 domain of villin

Deposition date:

2013-09-16

Original release date:

2014-04-15

Authors:

Serge, Smirnov

Citation:

Citation: Fedechkin, Stanislav; Brockerman, Jacob; Pfaff, Danielle; Burns, Lucian; Webb, Terry; Nelson, Alexander; Zhang, Fengli; Sabantsev, Anton; Melnikov, Alexey; McKnight, C. James; Smirnov, Serge. "Gelsolin-like activation of villin: calcium sensitivity of the long helix in domain 6." Biochemistry 52, 7890-7900 (2013).
PubMed: 24070253

Assembly members:

Assembly members:
Villin_domain_6, polymer, 107 residues, 12427.814 Da.

Natural source:

Natural source: Common Name: chicken Taxonomy ID: 9031 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Gallus gallus

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET24a

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Villin_domain_6: PRLFECSNKTGRFLATEIVD FTQDDLDENDVYLLDTWDQI FFWIGKGANESEKEAAAETA QEYLRSHPGSRDLDTPIIVV KQGFEPPTFTGWFMAWDPLC WSDRKSY

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	321
15N chemical shifts	100
1H chemical shifts	384

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Ca free domain 6 of villin	1

Entities:

Entity 1, Ca free domain 6 of villin 107 residues - 12427.814 Da.

1

PRO

ARG

LEU

PHE

GLU

CYS

SER

ASN

LYS

THR

2

GLY

ARG

PHE

LEU

ALA

THR

GLU

ILE

VAL

ASP

3

PHE

THR

GLN

ASP

LEU

ASP

GLU

ASN

ASP

4

VAL

TYR

LEU

ASP

THR

TRP

ASP

GLN

ILE

5

PHE

TRP

ILE

GLY

LYS

GLY

ALA

ASN

GLU

6

SER

GLU

LYS

GLU

ALA

GLU

THR

ALA

7

GLN

GLU

TYR

LEU

ARG

SER

HIS

PRO

GLY

SER

8

ARG

ASP

LEU

ASP

THR

PRO

ILE

VAL

9

LYS

GLN

GLY

PHE

GLU

PRO

THR

PHE

THR

10

GLY

TRP

PHE

MET

ALA

TRP

ASP

PRO

LEU

CYS

11

TRP

SER

ASP

ARG

LYS

SER

TYR

Samples:

sample_1: Villin domain 6, [U-95% 13C; U-95% 15N], 0.5 mM; sodium azide 0.01%; PIPES, [U-99% 2H], 20 mM; DTT 5 mM; H2O 90%; D2O 10%

sample_conditions_1: pH: 6.8; pressure: 1 atm; temperature: 273 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
3D HNCO	sample_1	isotropic	sample_conditions_1
3D HBHA(CO)NH	sample_1	isotropic	sample_conditions_1
3D HNCA	sample_1	isotropic	sample_conditions_1
3D HNCB	sample_1	isotropic	sample_conditions_1
3D HACONH	sample_1	isotropic	sample_conditions_1
3D CBCACONH	sample_1	isotropic	sample_conditions_1
3D HNCOCA	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC	sample_1	isotropic	sample_conditions_1

Software:

VNMRJ v2.2C, Varian - collection

ADAPT-NMR v2, Lee W, Hu K, Tonelli M, Bahrami A, Neuhardt E, Glass KC, Markley JL - chemical shift assignment, peak picking

CS23D v2, Wishart DS, Arndt D, Berjanskii M, Tang P, Zhou J, Lin G. - structure solution

Chiron, Ramachandran, S., Kota, P., Ding, F. and Dokholyan, N. V. - refinement

NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

NMR spectrometers:

Varian DirectDrive 700 MHz

BMRB	15097 18046
PDB	2LLF