BMRB Entry 19370

Name: calbindin D9k(P47M+C80) calcium bound form
Published: 2014-02-13

Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR19370

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

calbindin D9k(P47M+C80) calcium bound form

Deposition date:

2013-07-16

Original release date:

2014-02-13

Authors:

Hembram, Dambarudhar; Haremaki, Takahiro; Hamatsu, Jumpei; Inoue, Jin; Kamoshida, Hajime; Ikeya, Teppei; Mishima, Masaki; Mikawa, Tsutomu; Hayashi, Nobuhiro; Shirakawa, Masahiro; Ito, Yutaka

Citation:

Citation: Hembram, Dambarudhar Shiba Sankar; Haremaki, Takahiro; Hamatsu, Jumpei; Inoue, Jin; Kamoshida, Hajime; Ikeya, Teppei; Mishima, Masaki; Mikawa, Tsutomu; Hayashi, Nobuhiro; Shirakawa, Masahiro; Ito, Yutaka. "An in-cell NMR study of monitoring stress-induced increase of cytosolic Ca2+ concentration in HeLa cells." Biochem. Biophys. Res. Commun. 438, 653-659 (2013).
PubMed: 23933251

Assembly members:

Assembly members:
calbindin_D9k_calcium_bound-form, polymer, 77 residues, 40.078 Da.
CALCIUM ION, non-polymer, 40.078 Da.

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET3a

Entity Sequences (FASTA):

Entity Sequences (FASTA):
calbindin_D9k_calcium_bound-form: KKSPEELKRIFEKYAAKEGD PDQLSKDELKLLIQAEFPSL LKGMNTLDDLFQELDKNGDG EVSFEEFQVLVKKISQC

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	218
15N chemical shifts	69
1H chemical shifts	69

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	calbindin D9k	1
2	calcium ion	2

Entities:

Entity 1, calbindin D9k 77 residues - 40.078 Da.

1

LYS

SER

PRO

GLU

LEU

LYS

ARG

ILE

2

PHE

GLU

LYS

TYR

ALA

LYS

GLU

GLY

ASP

3

PRO

ASP

GLN

LEU

SER

LYS

ASP

GLU

LEU

LYS

4

LEU

ILE

GLN

ALA

GLU

PHE

PRO

SER

LEU

5

LEU

LYS

GLY

MET

ASN

THR

LEU

ASP

LEU

6

PHE

GLN

GLU

LEU

ASP

LYS

ASN

GLY

ASP

GLY

7

GLU

VAL

SER

PHE

GLU

PHE

GLN

VAL

LEU

8

VAL

LYS

ILE

SER

GLN

CYS

Entity 2, calcium ion - Ca - 40.078 Da.

1

CA

Samples:

sample: calbindin D9k calcium bound-form, [U-100% 13C; U-100% 15N], 1.5 mM; H2O 90%; D2O 10%

sample_conditions_1: ionic strength: 0.15 mM; pH: 7.4; pressure: 1 atm; temperature: 310 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample	isotropic	sample_conditions_1
3D HNCO	sample	isotropic	sample_conditions_1
3D HN(CA)CO	sample	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample	isotropic	sample_conditions_1
3D CBCANH	sample	isotropic	sample_conditions_1

Software:

AZARA v2.8, Boucher - processing

QME, Daniel O'Donovan and Ernest Laue - processing

ANALYSIS v2.2.2, CCPN - chemical shift assignment

NMR spectrometers:

Bruker Avance 600 MHz

BMRB	19369 19371
DBJ	BAI46392
EMBL	CAA46699
GB	AAA35637 AAA35638 AAI11918 AAI12175 EAW98916
REF	NP_004048 XP_001102900 XP_001139782 XP_002831466 XP_003261140
SP	P29377
AlphaFold	P29377