BMRB Entry 19288

Name: Solution NMR Structure of E3 ubiquitin-protein ligase ZFP91 from Homo sapiens, Northeast Structural Genomics Consortium (NESG) Target HR7784A
Published: 2013-07-22

Click here to enlarge.

PDB ID: 2m9a
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR19288
MolProbity Validation Chart

NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
XML gzip file.
RDF gzip file.
All files associated with the entry

Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

Select model:

I am color blind

Download raw data. Direct link to this display. Help

Title:

Solution NMR Structure of E3 ubiquitin-protein ligase ZFP91 from Homo sapiens, Northeast Structural Genomics Consortium (NESG) Target HR7784A

Deposition date:

2013-06-05

Original release date:

2013-07-22

Authors:

Pederson, Kari; Shastry, Ritu; Kohan, Eitan; Janjua, Haleema; Xiao, Rong; Acton, Thomas; Everett, John; Montelione, Gaetano; Prestegard, James

Citation:

Citation: Pederson, Kari; Montelione, Gaetano; Prestegard, James; Shastry, Ritu; Kohan, Eitan; Janjua, Haleema; Xiao, Rong; Acton, Thomas; Everett, John. "Solution Structure of Hr7784A" .

Assembly members:

Assembly members:
HR7784A, polymer, 98 residues, 10396.114 Da.
ZINC ION, non-polymer, 65.409 Da.

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET15_NESG

Entity Sequences (FASTA):

Entity Sequences (FASTA):
HR7784A: MGHHHHHHSHMRDYICEYCA RAFKSSHNLAVHRMIHTGEK PLQCEICGFTCRQKASLNWH MKKHDADSFYQFSCNICGKK FEKKDSVVAHKAKSHPEV

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1
RDCs
- C12E5_RDC
- Polyacrylamide_Gel_RDC

Data type	Count
13C chemical shifts	369
15N chemical shifts	90
1H chemical shifts	591
residual dipolar couplings	157

Time Domain Data

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
Hide all

Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	HR7784A	1
2	Zn_1	2
3	Zn_2	2
4	Zn_3	2

Entities:

Entity 1, HR7784A 98 residues - 10396.114 Da.

MGHHHHHHS are at N-terminal as part of His-Tag. It is not include in the coordinate file.

1

MET

GLY

HIS

SER

HIS

2

MET

ARG

ASP

TYR

ILE

CYS

GLU

TYR

CYS

ALA

3

ARG

ALA

PHE

LYS

SER

HIS

ASN

LEU

ALA

4

VAL

HIS

ARG

MET

ILE

HIS

THR

GLY

GLU

LYS

5

PRO

LEU

GLN

CYS

GLU

ILE

CYS

GLY

PHE

THR

6

CYS

ARG

GLN

LYS

ALA

SER

LEU

ASN

TRP

HIS

7

MET

LYS

HIS

ASP

ALA

ASP

SER

PHE

TYR

8

GLN

PHE

SER

CYS

ASN

ILE

CYS

GLY

LYS

9

PHE

GLU

LYS

ASP

SER

VAL

ALA

HIS

10

LYS

ALA

LYS

SER

HIS

PRO

GLU

VAL

Entity 2, Zn_1 - 65.409 Da.

1

ZN

Samples:

NC_sample: HR7784A, [U-100% 13C; U-100% 15N], 1.17 mM; MES 20 mM; sodium chloride 100 mM; calcium chloride 5 mM; DTT 10 mM; sodium azide 0.02%; DSS 50 uM; H2O 95%; D20 5%

C12E5: HR7784A, [U-100% 15N], 0.66 mM; MES 20 mM; sodium chloride 100 mM; calcium chloride 5 mM; DTT 10 mM; C12E5 4.2%; sodium azide 0.02%; DSS 50 uM; H2O 95%; D20 5%

Polyacrylamide_Gel: HR7784A, [U-100% 13C; U-100% 15N], 0.66 mM; MES 20 mM; sodium chloride 100 mM; calcium chloride 5 mM; DTT 10 mM; sodium azide 0.02%; DSS 50 uM; positively charged polyacrylamide gel 5%; H2O 95%; D20 5%

sample_conditions_1: ionic strength: 100 mM; pH: 6.5; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	NC_sample	isotropic	sample_conditions_1
2D 1H-13C HSQC aromatic	NC_sample	isotropic	sample_conditions_1
3D CBCA(CO)NH	NC_sample	isotropic	sample_conditions_1
3D HNCACB	NC_sample	isotropic	sample_conditions_1
3D HNCO	NC_sample	isotropic	sample_conditions_1
3D H(CCO)NH	NC_sample	isotropic	sample_conditions_1
3D HCCH-TOCSY	NC_sample	isotropic	sample_conditions_1
3D 1H-15N NOESY	NC_sample	isotropic	sample_conditions_1
3D 1H-13C NOESY aliphatic	NC_sample	isotropic	sample_conditions_1
3D 1H-13C NOESY aromatic	NC_sample	isotropic	sample_conditions_1
2D CB(CGCD)HD	NC_sample	isotropic	sample_conditions_1
2D CB(CGCDCE)HE	NC_sample	isotropic	sample_conditions_1
2D 1H-15N J-modulation HSQC	C12E5	anisotropic	sample_conditions_1
2D 1H-15N J-modulation HSQC	Polyacrylamide_Gel	anisotropic	sample_conditions_1
2D 1H-15N J-modulation HSQC	NC_sample	isotropic	sample_conditions_1

Software:

CYANA v2.1, Guntert, Mumenthaler and Wuthrich - structure solution

NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

SPARKY v3.113, Goddard - chemical shift assignment, peak picking

X-PLOR NIH v2.28, Schwieters, Kuszewski, Tjandra and Clore - refinement

PSVS v1.4, Bhattacharya and Montelione - data analysis

NMR spectrometers:

Varian INOVA 600 MHz

PDB	2M9A
DBJ	BAC26394 BAC40660 BAG58548
GB	KFQ07199
REF	XP_008587874 XP_010166167