BMRB Entry 19239

Name: 2C TCR
Published: 2013-07-23

Chem Shift validation: AVS_anomalous, AVS_full
BMRB Entry DOI: doi:10.13018/BMR19239

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

2C TCR

Deposition date:

2013-05-14

Original release date:

2013-07-23

Authors:

Hawse, Bill; Baker, Brian

Citation:

Citation: Hawse, WIlliam; Baker, Brian. "Assigned Chemical Shifts for the mini 2C TCR" .

Assembly members:

Assembly members:
2c_TCR, polymer, 248 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Mouse Taxonomy ID: 10090 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Mus musculus

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pet28a

Entity Sequences (FASTA):

Entity Sequences (FASTA):
2c_TCR: EAAVTQSPRNKVAVTGEKVT LSCNQTNNHNNMYWYRQDTG HELRLIHYSYGAGSTEKGDI PDGYKASRPSQENFSLTLES ATPSQTSVYFCASGGGGTLY FGAGTRLSVLSSADDAKKDA AKKDDAKKDDAKKDAQSVTQ PDARVTVSEGASLQLRCKYS YSATPYLFWYVQYPRQGPQL LLKYYSGDPVVQGVNGFEAE FSKSNSSFHLRKASVHRSDS AVYFCAVSGFASALTFGSGT KVIVLPYN

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	543
15N chemical shifts	188
1H chemical shifts	188

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	2c_TCR	1

Entities:

Entity 1, 2c_TCR 248 residues - Formula weight is not available

1

GLU

ALA

VAL

THR

GLN

SER

PRO

ARG

ASN

2

LYS

VAL

ALA

VAL

THR

GLY

GLU

LYS

VAL

THR

3

LEU

SER

CYS

ASN

GLN

THR

ASN

HIS

ASN

4

ASN

MET

TYR

TRP

TYR

ARG

GLN

ASP

THR

GLY

5

HIS

GLU

LEU

ARG

LEU

ILE

HIS

TYR

SER

TYR

6

GLY

ALA

GLY

SER

THR

GLU

LYS

GLY

ASP

ILE

7

PRO

ASP

GLY

TYR

LYS

ALA

SER

ARG

PRO

SER

8

GLN

GLU

ASN

PHE

SER

LEU

THR

LEU

GLU

SER

9

ALA

THR

PRO

SER

GLN

THR

SER

VAL

TYR

PHE

10

CYS

ALA

SER

GLY

THR

LEU

TYR

11

PHE

GLY

ALA

GLY

THR

ARG

LEU

SER

VAL

LEU

12

SER

ALA

ASP

ALA

LYS

ASP

ALA

13

ALA

LYS

ASP

ALA

LYS

ASP

14

ALA

LYS

ASP

ALA

GLN

SER

VAL

THR

GLN

15

PRO

ASP

ALA

ARG

VAL

THR

VAL

SER

GLU

GLY

16

ALA

SER

LEU

GLN

LEU

ARG

CYS

LYS

TYR

SER

17

TYR

SER

ALA

THR

PRO

TYR

LEU

PHE

TRP

TYR

18

VAL

GLN

TYR

PRO

ARG

GLN

GLY

PRO

GLN

LEU

19

LEU

LYS

TYR

SER

GLY

ASP

PRO

VAL

20

VAL

GLN

GLY

VAL

ASN

GLY

PHE

GLU

ALA

GLU

21

PHE

SER

LYS

SER

ASN

SER

PHE

HIS

LEU

22

ARG

LYS

ALA

SER

VAL

HIS

ARG

SER

ASP

SER

23

ALA

VAL

TYR

PHE

CYS

ALA

VAL

SER

GLY

PHE

24

ALA

SER

ALA

LEU

THR

PHE

GLY

SER

GLY

THR

25

LYS

VAL

ILE

VAL

LEU

PRO

TYR

ASN

Samples:

sample_1: 2c TCR, [U-99% 13C; U-99% 15N], 0.6 mM; sodium chloride 10 mM; TRIS 20 mM; H2O 90%; D2O 10%

sample_conditions_1: ionic strength: 50 mM; pH: 7.5; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
3D HNCO	sample_1	isotropic	sample_conditions_1
3D HNCA	sample_1	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_1	isotropic	sample_conditions_1
3D HNCACB	sample_1	isotropic	sample_conditions_1
3D HN(CO)CA	sample_1	isotropic	sample_conditions_1
3D HCACO	sample_1	isotropic	sample_conditions_1

Software:

Analysis, CCPN - data analysis

TOPSPIN, Bruker Biospin - data analysis

SPARKY, Goddard - data analysis

NMR spectrometers:

Bruker Avance 800 MHz

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks