BMRB Entry 18910

Name: NMR solution structure of the AVR3a11 from Phytophthora Capsici
Published: 2014-01-06

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PDB ID: 3zgk
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR18910
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

NMR solution structure of the AVR3a11 from Phytophthora Capsici

Deposition date:

2012-12-19

Original release date:

2014-01-06

Authors:

Tolchard, James; Chambers, V.; Boutemy, L.; Gathercole, R.; Banfield, M.; Blumenschein, T.

Citation:

Citation: Tolchard, James; Chambers, V.; Boutemy, L.; Gathercole, R.; Banfield, M.; Blumenschein, T.. "NMR SOLUTION STRUCTURE OF THE AVR3A11 FROM PHYTOPHTHORA CAPSI" .

Assembly members:

Assembly members:
AVR3A11, polymer, 72 residues, 8258.4707 Da.

Natural source:

Natural source: Common Name: Phytophthora capsici Taxonomy ID: 4784 Superkingdom: Eukaryota Kingdom: not available Genus/species: Phytophthora capsici

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: POPIN-F

Entity Sequences (FASTA):

Entity Sequences (FASTA):
AVR3A11: GPGLTDLFKTEKAAVKKMAK AIMADPSKADDVYQKWADKG YTLTQLSDFLKSKTRGKYDR VYNGYMTYRDYV

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list

Data type	Count
13C chemical shifts	205
15N chemical shifts	58
1H chemical shifts	379

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	AVR3A11	1

Entities:

Entity 1, AVR3A11 72 residues - 8258.4707 Da.

1

GLY

PRO

GLY

LEU

THR

ASP

LEU

PHE

LYS

THR

2

GLU

LYS

ALA

VAL

LYS

MET

ALA

LYS

3

ALA

ILE

MET

ALA

ASP

PRO

SER

LYS

ALA

ASP

4

ASP

VAL

TYR

GLN

LYS

TRP

ALA

ASP

LYS

GLY

5

TYR

THR

LEU

THR

GLN

LEU

SER

ASP

PHE

LEU

6

LYS

SER

LYS

THR

ARG

GLY

LYS

TYR

ASP

ARG

7

VAL

TYR

ASN

GLY

TYR

MET

THR

TYR

ARG

ASP

8

TYR

VAL

Samples:

sample_1: AVR3A11, [U-13C; U-15N], 1 mM

sample_conditions_1: ionic strength: 150.000 mM; pH: 8.800; pressure: 1.000 atm; temperature: 298.000 K

Experiments:

Name	Sample	Sample state	Sample conditions
1H-15N HSQC	sample_1	solution	sample_conditions_1
1H-13C HSQC	sample_1	solution	sample_conditions_1
1H-15N NOESY	sample_1	solution	sample_conditions_1
1H-13C NOESY	sample_1	solution	sample_conditions_1
CBCACONH	sample_1	solution	sample_conditions_1
HNCACB	sample_1	solution	sample_conditions_1
CCCONH	sample_1	solution	sample_conditions_1
H(CCO)NH	sample_1	solution	sample_conditions_1
1H-15N TOCSY	sample_1	solution	sample_conditions_1
Aromatic 1H-13C TROSY	sample_1	solution	sample_conditions_1
hbCBcgcdceHE	sample_1	solution	sample_conditions_1

Software:

AutoDep v4.3, PDBe - collection

CNS v1.3, BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- - chemical shift assignment

CNS_using_RECOORD_scripts vany, Brunger, Adams, Clore, Gros, Nilges and Read - data analysis

ANALYSIS vany, CCPN - chemical shift assignment

CYANA vany, Guntert, Mumenthaler and Wuthrich - data analysis

NMRPipe vany, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - chemical shift assignment

UNIO vany, UNIO - data analysis

NMR spectrometers:

Bruker Avance 800 MHz

UNP	G1K3S4_PHYCP
AlphaFold	G1K3S4