BMRB Entry 18878

Title:
Solution structure of the Hs. PSIP1 PWWP domain
Deposition date:
2012-12-06
Original release date:
2013-06-04
Authors:
van Ingen, Hugo; Van nuland, R.; Timmers, H.; Boelens, R.
Citation:

Citation: van Nuland, Rick; van Schaik, Frederik Ma; Simonis, Marieke; van Heesch, Sebastiaan; Cuppen, Edwin; Boelens, Rolf; Timmers, Ht Marc; van Ingen, Hugo. "Nucleosomal DNA binding drives the recognition of H3K36-methylated nucleosomes by the PSIP1-PWWP domain."  Epigenetics Chromatin 6, 12-12 (2013).
PubMed: 23656834

Assembly members:

Assembly members:
PC4_AND_SFRS1-INTERACTING_PROTEIN, polymer, 105 residues, 11890.6105 Da.

Natural source:

Natural source:   Common Name: Human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli   Vector: n/a

Entity Sequences (FASTA):

Data sets:
Data typeCount
13C chemical shifts408
15N chemical shifts90
1H chemical shifts657

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1PC4 AND SFRS1-INTERACTING PROTEIN1

Entities:

Entity 1, PC4 AND SFRS1-INTERACTING PROTEIN 105 residues - 11890.6105 Da.

1   GLYSERHISMETALAMETALAARGASPPHE
2   LYSPROGLYASPLEUILEPHEALALYSMET
3   LYSGLYTYRPROHISTRPPROALAARGVAL
4   ASPGLUVALPROASPGLYALAVALLYSPRO
5   PROTHRASNLYSLEUPROILEPHEPHEPHE
6   GLYTHRHISGLUTHRALAPHELEUGLYPRO
7   LYSASPILEPHEPROTYRSERGLUASNLYS
8   GLULYSTYRGLYLYSPROASNLYSARGLYS
9   GLYPHEASNGLUGLYLEUTRPGLUILEASP
10   ASNASNPROLYSVALLYSPHESERSERGLN
11   GLNALAALATHRLYS

Samples:

sample_1: PC4 AND SFRS1-INTERACTING PROTEIN, [U-13C; U-15N], 0.5 mM; NaPi 20 mM; NaCl 100 mM

sample_conditions_1: ionic strength: 100.000 mM; pH: 6.000; pressure: 1.000 atm; temperature: 298.000 K

Experiments:

NameSampleSample stateSample conditions
triple resonancesample_1solutionsample_conditions_1
13C/15N edited NOESYsample_1solutionsample_conditions_1

Software:

AutoDep v4.3, PDBe - collection

CNS vany, BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- - chemical shift assignment

CYANA vany, Guntert, Mumenthaler and Wuthrich - chemical shift assignment

SPARKY vany, Goddard - chemical shift assignment

NMR spectrometers:

  • Bruker Avance 750 MHz

Related Database Links:

UNP PSIP1_HUMAN
BMRB 18478
PDB
DBJ BAB27707 BAE24079 BAE36388 BAE41251 BAJ78791
EMBL CAC34944 CAC34945
GB AAC25167 AAC97945 AAC97946 AAF25870 AAF25871
REF NP_001009372 NP_001075982 NP_001121689 NP_001137364 NP_001193405
SP O75475 Q66T72 Q812D1 Q8MJG1 Q99JF8
TPG DAA26946
AlphaFold Q9UER6 O75475 Q99JF8 Q8MJG1 Q812D1 Q66T72

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks