BMRB Entry 18822

Name: Solution Structure of the trans-membrane domain of the NS2A of dengue virus
Published: 2013-02-21

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PDB ID: 2m0s
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, SPARTA
BMRB Entry DOI: doi:10.13018/BMR18822
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution Structure of the trans-membrane domain of the NS2A of dengue virus

Deposition date:

2012-11-05

Original release date:

2013-02-21

Authors:

Gayen, Shovanlal; Kang, Congbao

Citation:

Citation: Xie, Xuping; Gayen, Shovanlal; Kang, Congbao; Yuan, Zhiming; Shi, Pei-Yong. "Membrane Topology and Function of Dengue Virus NS2A Protein." J. Virol. 87, 4609-4622 (2013).
PubMed: 23408612

Assembly members:

Assembly members:
entity, polymer, 28 residues, 2981.647 Da.

Natural source:

Natural source: Common Name: Dengue virus Taxonomy ID: 12637 Superkingdom: Viruses Kingdom: not available Genus/species: Flavivirus Dengue virus

Experimental source:

Experimental source: Production method: chemical synthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity: DIGMGVTYLALLAAFKVRPT FAAGLLLR

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	26
15N chemical shifts	26
1H chemical shifts	179

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	trans-membrane domain of the NS2A	1

Entities:

Entity 1, trans-membrane domain of the NS2A 28 residues - 2981.647 Da.

1

ASP

ILE

GLY

MET

GLY

VAL

THR

TYR

LEU

ALA

2

LEU

ALA

PHE

LYS

VAL

ARG

PRO

THR

3

PHE

ALA

GLY

LEU

ARG

Samples:

sample_1: entity 3 mg/mL; chloroform, [U-2H], 44.4%; methanol, [U-2H], 44.4%; H2O 11.2%

sample_conditions_1: pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
2D 1H-1H TOCSY	sample_1	isotropic	sample_conditions_1
2D 1H-1H NOESY	sample_1	isotropic	sample_conditions_1

Software:

TOPSPIN v2.1, Bruker Biospin - collection, processing

SPARKY, Goddard - chemical shift assignment

CYANA, Guntert, Mumenthaler and Wuthrich - structure solution

NMR spectrometers:

Bruker Avance 700 MHz

PDB	2M0S
DBJ	BAD36758 BAD36759 BAD36760 BAD42415 BAD42416
EMBL	CAD31751 CAI92123 CAR65133 CAR65134 CAR65135
GB	AAA42941 AAA42942 AAA42962 AAA66406 AAA73185
PRF	1301272A
REF	NP_056776 NP_739585
SP	P07564 P12823 P14337 P14340 P29990
AlphaFold	P07564 P12823 P14337 P14340 P29990