BMRB Entry 18771

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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR18771
MolProbity Validation Chart

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Title:
TatA oligomer
Deposition date:
2012-10-08
Original release date:
2013-03-18
Authors:
Rodriguez, Fernanda; Rouse, Sarah; Tait, Claudia; Harmer, Jeffrey; de Riso, Antonio; Timmel, Christiane; Sansom, Mark; Berks, Ben; Schnell, Jason
Citation:

Citation: Rodriguez, Fernanda; Rouse, Sarah; Tait, Claudia; Harmer, Jeffrey; De Riso, Antonio; Timmel, Christiane; Sansom, Mark; Berks, Ben; Schnell, Jason. "Structural model for the protein-translocating element of the twin-arginine transport system."  Proc. Natl. Acad. Sci. U.S.A. 110, E1092-E1101 (2013).
PubMed: 23471988

Assembly members:

Assembly members:
TatA oligomer, polymer, 55 residues, 5181.249 Da.

Natural source:

Natural source:   Common Name: E. coli   Taxonomy ID: 562   Superkingdom: Bacteria   Kingdom: not available   Genus/species: Escherichia coli

Experimental source:

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli   Vector: pET24 TatAd40

Entity Sequences (FASTA):

Entity Sequences (FASTA):
TatA oligomer: XGGISIWQLLIIAVIVVLLF GTKKLGSIGSDLGASIKGFK KAMSDDEPKHHHHHH

Data sets:
Data typeCount
13C chemical shifts31
15N chemical shifts45
1H chemical shifts136

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1TatA oligomer, 11
2TatA oligomer, 21
3TatA oligomer, 31
4TatA oligomer, 41
5TatA oligomer, 51
6TatA oligomer, 61
7TatA oligomer, 71
8TatA oligomer, 81
9TatA oligomer, 91

Entities:

Entity 1, TatA oligomer, 1 55 residues - 5181.249 Da.

1   FMEGLYGLYILESERILETRPGLNLEULEU
2   ILEILEALAVALILEVALVALLEULEUPHE
3   GLYTHRLYSLYSLEUGLYSERILEGLYSER
4   ASPLEUGLYALASERILELYSGLYPHELYS
5   LYSALAMETSERASPASPGLUPROLYSHIS
6   HISHISHISHISHIS

Samples:

N: TatA oligomer, [U-15N], 0.5 mM; DPC 30 mM; H2O 95%; D2O 5%

N_methyl: TatA oligomer, [U-13C; U-15N; U-2H]*, 0.5 mM; DPC, [U-2H], 30 mM; H2O 95%; D2O 5%

NC: TatA oligomer, [U-13C; U-15N], 0.5 mM; DPC, [U-2H], 30 mM; H2O 95%; D2O 5%

sample_conditions_1: ionic strength: 0.05 M; pH: 7.0; pressure: 1 atm; temperature: 303 K

sample_conditions_2: ionic strength: 0.05 M; pH: 7.0; pressure: 1 atm; temperature: 310 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-15N HMQCNisotropicsample_conditions_1
3D 1H-13C NOESY aliphaticNCisotropicsample_conditions_2
3D 1H-13C NOESY aromaticN_methylisotropicsample_conditions_1
3D 1H-13C NOESY aliphaticN_methylisotropicsample_conditions_1

Software:

X-PLOR NIH, Schwieters, Kuszewski, Tjandra and Clore - refinement

CARA, Keller and Wuthrich - chemical shift assignment

NMRDraw, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - data analysis

NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

NMR spectrometers:

  • Homebuilt Omega 950 MHz
  • Homebuilt Omega 750 MHz
  • Homebuilt Omega 600 MHz
  • Bruker Avance 500 MHz

Related Database Links:

BMRB 18770
PDB
DBJ BAO66494
GB AAA67633 AHO22621 AKL14156 EIQ60782
REF WP_039077060 WP_047372274

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks