BMRB Entry 18635

Title:
Backbone resonance assignments of human beta-defensin 1
Deposition date:
2012-08-02
Original release date:
2019-08-30
Authors:
de Paula, Viviane; Gomes, Natalia; Lima, Luize; Miyamoto, Catarina; Monteiro, Robson; Almeida, Fabio; Valente, Ana Paula
Citation:

Citation: De Paula, Viviane; Pomin, Vitor; Valente, Ana Paula. "Unique properties of human beta-defensin 6 (hBD6) and glycosaminoglycan complex: sandwich-like dimerization and competition with the chemokine receptor 2 (CCR2) binding site"  J. Biol. Chem. 289, 22969-22979 (2014).
PubMed: 24970887

Assembly members:

Assembly members:
HbD1, polymer, 36 residues, Formula weight is not available

Natural source:

Natural source:   Common Name: Human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli   Vector: pet32a

Entity Sequences (FASTA):

Entity Sequences (FASTA):
HbD1: DHYNCVSSGGQCLYSACPIF TKIQGTCYRGKAKCCK

Data sets:
Data typeCount
13C chemical shifts61
15N chemical shifts33
1H chemical shifts103

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1HbD11

Entities:

Entity 1, HbD1 36 residues - Formula weight is not available

1   ASPHISTYRASNCYSVALSERSERGLYGLY
2   GLNCYSLEUTYRSERALACYSPROILEPHE
3   THRLYSILEGLNGLYTHRCYSTYRARGGLY
4   LYSALALYSCYSCYSLYS

Samples:

sample_1: HbD1 0.5 mM; sodium phosphate0.2 – 0.6 mM; H2O 90%; D2O 10%; phosphate buffer 30 mM; sodium chloride 50 mM; potassium chloride 0.9 mM

sample_conditions_1: ionic strength: 20 M; pH: 7.4; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
3D HNCACBsample_1isotropicsample_conditions_1
3D HNCAsample_1isotropicsample_conditions_1
3D CBCA(CO)NHsample_1isotropicsample_conditions_1
3D HBHA(CO)NHsample_1isotropicsample_conditions_1
2D 1H-15N HSQCsample_1isotropicsample_conditions_1

Software:

CARA, Keller and Wuthrich - chemical shift assignment

NMR spectrometers:

  • Bruker Avance 800 MHz

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks