BMRB Entry 18587

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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR18587
MolProbity Validation Chart

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Title:
MHV nsp3a
Deposition date:
2012-07-10
Original release date:
2013-02-28
Authors:
Keane, Sarah; Giedroc, David
Citation:

Citation: Keane, Sarah; Giedroc, David. "Solution Structure of Mouse Hepatitis Virus (MHV) nsp3a and Determinants of the Interaction with MHV Nucleocapsid (N) Protein."  J. Virol. 87, 3502-3515 (2013).
PubMed: 23302895

Assembly members:

Assembly members:
MHV_nsp3a, polymer, 114 residues, Formula weight is not available

Natural source:

Natural source:   Common Name: Murine hepatitis virus   Taxonomy ID: 11138   Superkingdom: Viruse   Kingdom: not available   Genus/species: Betacoronavirus not available

Experimental source:

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli   Vector: pET3a

Entity Sequences (FASTA):

Entity Sequences (FASTA):
MHV_nsp3a: GKKVEFNDKPKVRKIPSTRK IKITFALDATFDSVLSKACS EFEVDKDVTLDELLDVVLDA VESTLSPCKEHDVIGTKVCA LLDRLAGDYVYLFDEGGDEV IAPRMYCSFSAPDD

Data sets:
Data typeCount
13C chemical shifts407
15N chemical shifts107
1H chemical shifts732

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1nsp3a1

Entities:

Entity 1, nsp3a 114 residues - Formula weight is not available

1   GLYLYSLYSVALGLUPHEASNASPLYSPRO
2   LYSVALARGLYSILEPROSERTHRARGLYS
3   ILELYSILETHRPHEALALEUASPALATHR
4   PHEASPSERVALLEUSERLYSALACYSSER
5   GLUPHEGLUVALASPLYSASPVALTHRLEU
6   ASPGLULEULEUASPVALVALLEUASPALA
7   VALGLUSERTHRLEUSERPROCYSLYSGLU
8   HISASPVALILEGLYTHRLYSVALCYSALA
9   LEULEUASPARGLEUALAGLYASPTYRVAL
10   TYRLEUPHEASPGLUGLYGLYASPGLUVAL
11   ILEALAPROARGMETTYRCYSSERPHESER
12   ALAPROASPASP

Samples:

sample_1: MHV nsp3a, [U-100% 13C; U-100% 15N], 200 uM; potassium chloride 100 mM; potassium phosphate 50 mM; TCEP 5 mM; H2O 90%; D2O 10%

sample_2: MHV nsp3a, [U-100% 13C; U-100% 15N], 200 uM; potassium chloride 100 mM; potassium phosphate 50 mM; TCEP 5 mM; D2O 100%

sample_conditions_1: ionic strength: 0.15 M; pH: 6.00; pressure: 1 atm; temperature: 273 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-15N HSQCsample_1isotropicsample_conditions_1
2D 1H-13C HSQC aliphaticsample_2isotropicsample_conditions_1
2D 1H-13C HSQC aromaticsample_2isotropicsample_conditions_1
3D HNCOsample_1isotropicsample_conditions_1
3D CBCA(CO)NHsample_1isotropicsample_conditions_1
3D HNCACBsample_1isotropicsample_conditions_1
3D HNHAsample_1isotropicsample_conditions_1
3D HNCAsample_1isotropicsample_conditions_1
3D C(CO)NHsample_1isotropicsample_conditions_1
3D H(CCO)NHsample_1isotropicsample_conditions_1
3D 1H-13C NOESY aliphaticsample_2isotropicsample_conditions_1
3D 1H-13C NOESY aromaticsample_2isotropicsample_conditions_1
3D HCCH-TOCSYsample_2isotropicsample_conditions_1
3D HCCH-COSYsample_2isotropicsample_conditions_1
3D 1H-15N NOESYsample_1isotropicsample_conditions_1
3D 1H-15N TOCSYsample_1isotropicsample_conditions_1
2D HBCBCGCDHDsample_2isotropicsample_conditions_1

Software:

NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

NMRDraw, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

SPARKY, Goddard - chemical shift assignment, data analysis, peak picking

PINE, Bahrami, Markley, Assadi, and Eghbalnia - chemical shift assignment

TALOS, Cornilescu, Delaglio and Bax - data analysis

NMR spectrometers:

  • Varian VNMRS 600 MHz
  • Varian VNMRS 800 MHz

Related Database Links:

PDB
GB AAB86820 AAF69341 AAU06352 AAU06353 AAX23975
REF NP_045298 NP_068668 NP_740609
SP P0C6V0 P0C6X9
AlphaFold P0C6V0 P0C6X9

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks