BMRB Entry 18585

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR18585

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Title:
Griffithsin assignment
Deposition date:
2012-07-09
Original release date:
2012-08-21
Authors:
Xue, Jie; Gao, Yongguang; LiWang, Patricia
Citation:

Citation: Xue, Jie; Gao, Yongguang; Hoorelbeke, Bart; Kagiampakis, Ioannis; Zhao, Bo; Demeler, Borries; Balzarini, Jan; Liwang, Patricia. "The role of individual carbohydrate-binding sites in the function of the potent anti-HIV lectin griffithsin."  Mol. Pharm. 9, 2613-2625 (2012).
PubMed: 22827601

Assembly members:

Assembly members:
Griffithsin_(GRFT), polymer, 140 residues, Formula weight is not available

Natural source:

Natural source:   Common Name: Red Algae   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Protozoa   Genus/species: Griffithsia not available

Experimental source:

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli   Vector: pET 15b

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Griffithsin_(GRFT): MGGSSHHHHHHSSGLVPRGS LTHRKFGGSGGSPFSGLSSI AVRSGSYLDAIIIDGVHHGG SGGNLSPTFTFGSGEYISNM TIRSGDYIDNISFETNMGRR FGPYGGSGGSANTLSNVKVI QINGSAGDYLDSLDIYYEQY

Data sets:
Data typeCount
13C chemical shifts244
15N chemical shifts107
1H chemical shifts107

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1GRFT1

Entities:

Entity 1, GRFT 140 residues - Formula weight is not available

1   METGLYGLYSERSERHISHISHISHISHIS
2   HISSERSERGLYLEUVALPROARGGLYSER
3   LEUTHRHISARGLYSPHEGLYGLYSERGLY
4   GLYSERPROPHESERGLYLEUSERSERILE
5   ALAVALARGSERGLYSERTYRLEUASPALA
6   ILEILEILEASPGLYVALHISHISGLYGLY
7   SERGLYGLYASNLEUSERPROTHRPHETHR
8   PHEGLYSERGLYGLUTYRILESERASNMET
9   THRILEARGSERGLYASPTYRILEASPASN
10   ILESERPHEGLUTHRASNMETGLYARGARG
11   PHEGLYPROTYRGLYGLYSERGLYGLYSER
12   ALAASNTHRLEUSERASNVALLYSVALILE
13   GLNILEASNGLYSERALAGLYASPTYRLEU
14   ASPSERLEUASPILETYRTYRGLUGLNTYR

Samples:

GRFT_in_20_mM_sodium_phosphate_pH_7: Griffithsin (GRFT), [U-100% 13C; U-100% 15N], 500 uM; H2O 90%; D2O 10%

GRFT_in_20_mM_sodium_phosphate_pH_7_conditions: ionic strength: 104 mM; pH: 7; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-15N HSQCGRFT_in_20_mM_sodium_phosphate_pH_7isotropicGRFT_in_20_mM_sodium_phosphate_pH_7_conditions
3D HNCOGRFT_in_20_mM_sodium_phosphate_pH_7isotropicGRFT_in_20_mM_sodium_phosphate_pH_7_conditions
3D HN(CA)COGRFT_in_20_mM_sodium_phosphate_pH_7isotropicGRFT_in_20_mM_sodium_phosphate_pH_7_conditions
3D HNCACBGRFT_in_20_mM_sodium_phosphate_pH_7isotropicGRFT_in_20_mM_sodium_phosphate_pH_7_conditions
3D CBCA(CO)NHGRFT_in_20_mM_sodium_phosphate_pH_7isotropicGRFT_in_20_mM_sodium_phosphate_pH_7_conditions
3D HNCAGRFT_in_20_mM_sodium_phosphate_pH_7isotropicGRFT_in_20_mM_sodium_phosphate_pH_7_conditions
3D HN(CO)CAGRFT_in_20_mM_sodium_phosphate_pH_7isotropicGRFT_in_20_mM_sodium_phosphate_pH_7_conditions

Software:

SPARKY_NMR_view_PIPP_NMRPIPE, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax, Garrett, Goddard, Johnson, One Moon Scientific - chemical shift assignment

NMR spectrometers:

  • Bruker Avance 600 MHz

Related Database Links:

BMRB 18576
PDB
GB AAW66484 AAW66485 ACM42413
SP P84801
AlphaFold P84801

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks