BMRB Entry 18079

Name: UNAC Tetraloops: To What Extent Can They Mimic GNRA Tetraloops
Published: 2012-05-22

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PDB ID: 4a4r
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR18079
MolProbity Validation Chart

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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

UNAC Tetraloops: To What Extent Can They Mimic GNRA Tetraloops

Deposition date:

2011-11-14

Original release date:

2012-05-22

Authors:

Zhao, Q.; Huang, H.; Nagaswamy, U.; Xia, Y.; Gao, X.; Fox, George

Citation:

Citation: Zhao, Qin; Huang, Hung-Chung; Nagaswamy, Uma; Xia, Youlin; Gao, Xiaolian; Fox, George. "UNAC tetraloops: to what extent do they mimic GNRA tetraloops?" Biopolymers 97, 617-628 (2012).
PubMed: 22605553

Assembly members:

Assembly members:
5'-R(*GP*GP*AP*CP*CP*CP*GP*GP*CP*UP*AP*AP*CP*GP_*CP*UP*GP*GP*GP*UP*CP*C)-3'_, polymer, 22 residues, 7048.30396 Da.

Natural source:

Natural source: Common Name: Haloarcula marismortui Taxonomy ID: 2238 Superkingdom: Bacteria Kingdom: not available Genus/species: Haloarcula marismortui

Experimental source:

Experimental source: Production method: chemical synthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
5'-R(*GP*GP*AP*CP*CP*CP*GP*GP*CP*UP*AP*AP*CP*GP_*CP*UP*GP*GP*GP*UP*CP*C)-3'_: XGACCCGGCUAACGCUGGGU CC

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list

Data type	Count
1H chemical shifts	90

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	UNAC	1

Entities:

Entity 1, UNAC 22 residues - 7048.30396 Da.

1

GMP

G

A

C

G

C

U

2

A

C

G

C

U

G

U

3

C

Samples:

sample_1: UNAC, [U-13C; U-15N], 0.3 mM; D2O 99.96%

sample_conditions_1: pH: 7.000; pressure: 1 atm; temperature: 298.000 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D NOESY	sample_1	solution	sample_conditions_1
DQF-COSY	sample_1	solution	sample_conditions_1

Software:

AutoDep v4.3, AutoDep - chemical shift assignment

CNS vany, BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- - chemical shift assignment

NMR spectrometers:

Bruker Avance 0 MHz
Bruker AVANCE 600 MHz