BMRB Entry 18041

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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR18041
MolProbity Validation Chart

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Title:
Solution structure of the EDC3-LSm domain
Deposition date:
2011-11-07
Original release date:
2012-01-23
Authors:
Truffault, Vincent
Citation:

Citation: Fromm, Simon; Truffault, Vincent; Kamenz, Julia; Braun, Joerg; Hoffmann, Niklas; Izaurralde, Elisa; Sprangers, Remco. "The structural basis of Edc3- and Scd6-mediated activation of the Dcp1:Dcp2 mRNA decapping complex."  EMBO J. 31, 279-290 (2011).
PubMed: 22085934

Assembly members:

Assembly members:
EDC3-LSm, polymer, 125 residues, 14016.833 Da.

Natural source:

Natural source:   Common Name: fission yeast   Taxonomy ID: 4896   Superkingdom: Eukaryota   Kingdom: Fungi   Genus/species: Schizosaccharomyces pombe

Experimental source:

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli   Vector: pET

Entity Sequences (FASTA):

Entity Sequences (FASTA):
EDC3-LSm: GAMGMSVADFYGSNVEVLLN NDSKARGVITNFDSSNSILQ LRLANDSTKSIVTKDIKDLR ILPKNEIMPKNGTKSPSTNS TKLKSAETYSSKNKWSMDCD EEFDFAANLEKFDKKQVFAE FREKD

Data sets:
Data typeCount
13C chemical shifts386
15N chemical shifts93
1H chemical shifts596

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1EDC3-LSm domain1

Entities:

Entity 1, EDC3-LSm domain 125 residues - 14016.833 Da.

1   GLYALAMETGLYMETSERVALALAASPPHE
2   TYRGLYSERASNVALGLUVALLEULEUASN
3   ASNASPSERLYSALAARGGLYVALILETHR
4   ASNPHEASPSERSERASNSERILELEUGLN
5   LEUARGLEUALAASNASPSERTHRLYSSER
6   ILEVALTHRLYSASPILELYSASPLEUARG
7   ILELEUPROLYSASNGLUILEMETPROLYS
8   ASNGLYTHRLYSSERPROSERTHRASNSER
9   THRLYSLEULYSSERALAGLUTHRTYRSER
10   SERLYSASNLYSTRPSERMETASPCYSASP
11   GLUGLUPHEASPPHEALAALAASNLEUGLU
12   LYSPHEASPLYSLYSGLNVALPHEALAGLU
13   PHEARGGLULYSASP

Samples:

sample_1: EDC3-LSm, [U-100% 15N], 0.7 mM; NaPO4 50 mM; imidazole 10 mM; NaCl 150 mM

sample_conditions_1: ionic strength: 150 mM; pH: 7.5; pressure: 1 atm; temperature: 303 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-15N HSQCsample_1isotropicsample_conditions_1

Software:

X-PLOR NIH, Schwieters, Kuszewski, Tjandra and Clore - structure solution

NMR spectrometers:

  • Bruker Avance 800 MHz

Related Database Links:

BMRB 18042
PDB
EMBL CAA22671
REF NP_595858
SP O94752
AlphaFold O94752

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks