BMRB Entry 18004
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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR18004
MolProbity Validation Chart
NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
XML gzip file.
RDF gzip file.
All files associated with the entry
Citation: Kateb, F.; Perrin, H.; Tripsianes, Kostantinos; Zou, P.; Spadaccini, R.; Bottomley, M.; Bepperling, A.; Ansieau, S.; Sattler, M.. "Structural and functional analysis of the DEAF-1 and BS69 MYND domains" J. Mol. Biol. ., .-..
Assembly members:
DEFORMED_EPIDERMAL_AUTOREGULATORY_FACTOR_1_HOMOLO, polymer, 47 residues, 5262.8434 Da.
ZN, non-polymer, 65.409 Da.
Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens
Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pETMThx-MYND
Entity Sequences (FASTA):
DEFORMED_EPIDERMAL_AUTOREGULATORY_FACTOR_1_HOMOLO: GAMEQSCVNCGREAMSECTG
CHKVNYCSTFCQRKDWKDHQ
HICGQSA
- assigned_chemical_shifts
| Data type | Count |
| 13C chemical shifts | 179 |
| 15N chemical shifts | 52 |
| 1H chemical shifts | 280 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | DEFORMED EPIDERMAL AUTOREGULATORY FACTOR 1 HOMOLO | 1 |
| 2 | ZINC ION | 2 |
| 3 | ZINC ION | 2 |
Entities:
Entity 1, DEFORMED EPIDERMAL AUTOREGULATORY FACTOR 1 HOMOLO 47 residues - 5262.8434 Da.
| 1 | GLY | ALA | MET | GLU | GLN | SER | CYS | VAL | ASN | CYS | ||||
| 2 | GLY | ARG | GLU | ALA | MET | SER | GLU | CYS | THR | GLY | ||||
| 3 | CYS | HIS | LYS | VAL | ASN | TYR | CYS | SER | THR | PHE | ||||
| 4 | CYS | GLN | ARG | LYS | ASP | TRP | LYS | ASP | HIS | GLN | ||||
| 5 | HIS | ILE | CYS | GLY | GLN | SER | ALA |
Entity 2, ZINC ION - Zn - 65.409 Da.
| 1 | ZN |
Samples:
sample_1: DEFORMED EPIDERMAL AUTOREGULATORY FACTOR 1 HOMOLO, [U-13C; U-15N], 1 mM; H2O 10%; D2O 90%; PO4 50 mM; NaCl 100 mM; DTT 2 mM
sample_conditions_1: ionic strength: 100.000 mM; pH: 6.500; pressure: 1.000 atm; temperature: 295.000 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 2D 1H-1H NOESY | sample_1 | solution | sample_conditions_1 |
| 3D 1H-15N NOESY | sample_1 | solution | sample_conditions_1 |
| 3D 1H-13C NOESY (aliphatic carbons) | sample_1 | solution | sample_conditions_1 |
| 3D 1H-13C NOESY (aromatic carbons) | sample_1 | solution | sample_conditions_1 |
| 3D 1H-15N NOESY | sample_1 | solution | sample_conditions_1 |
| 3D 1H-13C NOESY (ALIPHATIC CARBONS) | sample_1 | solution | sample_conditions_1 |
| 3D 1H-13C NOESY (AROMATIC CARBONS) | sample_1 | solution | sample_conditions_1 |
Software:
ARIA-CNS vany, Linge, O'Donoghue and Nilges - chemical shift assignment
AutoDep v4.3, AutoDep - chemical shift assignment
CNS-ARIA vany, Brunger, Adams, Clore, Gros, Nilges and Read - chemical shift assignment
CYANA vany, Guntert, Mumenthaler and Wuthrich - chemical shift assignment
NMRPipe vany, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - chemical shift assignment
SPARKY vany, Goddard - collection
TALOS vany, Cornilescu, Delaglio and Bax - data analysis
NMR spectrometers:
- Bruker Avance 600 MHz
- Bruker Avance 900 MHz
Related Database Links:
| UNP | DEAF1_HUMAN |
| PDB | |
| DBJ | BAD93068 BAE27251 BAF82562 BAF84072 BAH24132 |
| GB | AAB62704 AAC25716 AAC25719 AAC79676 AAC79677 |
| REF | NP_001008974 NP_001269001 NP_058570 NP_066288 NP_113989 |
| SP | O75398 O77562 O88450 Q9Z1T5 |
| AlphaFold | Q9UET1 O75398 O77562 O88450 Q9Z1T5 |
Download HSQC peak lists in one of the following formats:
CSV: Backbone
or all simulated peaks
SPARKY: Backbone
or all simulated peaks