BMRB Entry 17912

Name: The third SH3 domain of R85FL
Published: 2012-09-14

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PDB ID: 2lj0
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR17912
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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

The third SH3 domain of R85FL

Deposition date:

2011-09-02

Original release date:

2012-09-14

Authors:

Jiang, Ya-Jun; Hu, Hongyu

Citation:

Citation: Jiang, Ya-Jun; Zhou, Chen-Jie; Zhou, Zi-Ren; Wu, Meng; Hu, Hong-Yu. "Structural basis for recognition of the third SH3 domain of full-length R85 (R85FL)/ponsin by ataxin-7." FEBS Lett. 587, 2905-2911 (2013).
PubMed: 23892081

Assembly members:

Assembly members:
third SH3 domain of R85FL, polymer, 65 residues, 7581.400 Da.

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET-22b

Entity Sequences (FASTA):

Entity Sequences (FASTA):
third SH3 domain of R85FL: QTSQDLFSYQALYSYIPQND DELELRDGDIVDVMEKCDDG WFVGTSRRTKQFGTFPGNYV KPLYL

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	229
15N chemical shifts	66
1H chemical shifts	396

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	third SH3 domain of R85FL	1

Entities:

Entity 1, third SH3 domain of R85FL 65 residues - 7581.400 Da.

1

GLN

THR

SER

GLN

ASP

LEU

PHE

SER

TYR

GLN

2

ALA

LEU

TYR

SER

TYR

ILE

PRO

GLN

ASN

ASP

3

ASP

GLU

LEU

GLU

LEU

ARG

ASP

GLY

ASP

ILE

4

VAL

ASP

VAL

MET

GLU

LYS

CYS

ASP

GLY

5

TRP

PHE

VAL

GLY

THR

SER

ARG

THR

LYS

6

GLN

PHE

GLY

THR

PHE

PRO

GLY

ASN

TYR

VAL

7

LYS

PRO

LEU

TYR

LEU

Samples:

sample_1: sodium phosphate 1 mM; H2O 90%; D2O 10%

sample_conditions_1: ionic strength: 0.12 M; pH: 6.5; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_1	isotropic	sample_conditions_1
3D C(CO)NH	sample_1	isotropic	sample_conditions_1
3D HNCO	sample_1	isotropic	sample_conditions_1
3D HNCACB	sample_1	isotropic	sample_conditions_1
3D H(CCO)NH	sample_1	isotropic	sample_conditions_1
3D HNHA	sample_1	isotropic	sample_conditions_1
3D HCCH-TOCSY	sample_1	isotropic	sample_conditions_1
3D 1H-15N NOESY	sample_1	isotropic	sample_conditions_1
3D 1H-13C NOESY	sample_1	isotropic	sample_conditions_1

Software:

ARIA, Linge, O'Donoghue and Nilges - structure solution

NMR spectrometers:

Bruker Avance 600 MHz

BMRB	17913
PDB	2LJ0 2LJ1
DBJ	BAA92534 BAG58006 BAG62137 BAG65026 BAG72789
EMBL	CAB55947 CAD34588 CAE45892 CAH89601 CAH90184
GB	AAD27647 AAF22175 AAI52464 AAI60134 AAK37563
REF	NP_001030126 NP_001030127 NP_001030128 NP_001030129 NP_001068637
SP	Q9BX66
AlphaFold	Q9BX66