BMRB Entry 17747

Name: Solution NMR Structure of Fumarate reductase flavoprotein subunit from Lactobacillus plantarum, Northeast Structural Genomics Consortium Target LpR145J
Published: 2011-08-03

Click here to enlarge.

PDB ID: 2lfc
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR17747
MolProbity Validation Chart

NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
XML gzip file.
RDF gzip file.
All files associated with the entry

Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

Select model:

I am color blind

Download raw data. Direct link to this display. Help

Title:

Solution NMR Structure of Fumarate reductase flavoprotein subunit from Lactobacillus plantarum, Northeast Structural Genomics Consortium Target LpR145J

Deposition date:

2011-06-29

Original release date:

2011-08-03

Authors:

Liu, Gaohua; Tang, Yuefeng; Xiao, Rong; Janjua, Haleema; Ciccosanti, colleen; Wang, Huang; Acton, Thomas; Everett, John; Montelione, Gaetano

Citation:

Citation: Liu, Gaohua; Tang, Yuefeng; Xiao, Rong; Janjua, Haleema; Ciccosanti, colleen; Wang, Huang; Acton, Thomas; Everett, John; Montelione, Gaetano. "Northeast Structural Genomics Consortium Target LpR145J" To be published ., .-..

Assembly members:

Assembly members:
LpR145J, polymer, 160 residues, 18527.973 Da.

Natural source:

Natural source: Common Name: Lactobacillus plantarum Taxonomy ID: 1590 Superkingdom: Bacteria Kingdom: not available Genus/species: Lactobacillus plantarum

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET 21-23C

Entity Sequences (FASTA):

Entity Sequences (FASTA):
LpR145J: MVEPGVAKLTTYASKQATDM GAIYVNSKGDRIVNESNVYT TFRNAILKQADKVAYLVMDE RTWKKVYDLLILHDFTPEEI KSFFENKGKRPVFVKGSLES AAEQAGIVVDELVQTVKNYQ GYVQDGHDHDFGRDPKYLHQ FEGETFYIIEQRLEHHHHHH

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	676
15N chemical shifts	143
1H chemical shifts	1080

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
Hide all

Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	LpR145J	1

Entities:

Entity 1, LpR145J 160 residues - 18527.973 Da.

1	MET	VAL	GLU	PRO	GLY	VAL	ALA	LYS	LEU	THR
2	THR	TYR	ALA	SER	LYS	GLN	ALA	THR	ASP	MET
3	GLY	ALA	ILE	TYR	VAL	ASN	SER	LYS	GLY	ASP
4	ARG	ILE	VAL	ASN	GLU	SER	ASN	VAL	TYR	THR
5	THR	PHE	ARG	ASN	ALA	ILE	LEU	LYS	GLN	ALA
6	ASP	LYS	VAL	ALA	TYR	LEU	VAL	MET	ASP	GLU
7	ARG	THR	TRP	LYS	LYS	VAL	TYR	ASP	LEU	LEU
8	ILE	LEU	HIS	ASP	PHE	THR	PRO	GLU	GLU	ILE
9	LYS	SER	PHE	PHE	GLU	ASN	LYS	GLY	LYS	ARG
10	PRO	VAL	PHE	VAL	LYS	GLY	SER	LEU	GLU	SER
11	ALA	ALA	GLU	GLN	ALA	GLY	ILE	VAL	VAL	ASP
12	GLU	LEU	VAL	GLN	THR	VAL	LYS	ASN	TYR	GLN
13	GLY	TYR	VAL	GLN	ASP	GLY	HIS	ASP	HIS	ASP
14	PHE	GLY	ARG	ASP	PRO	LYS	TYR	LEU	HIS	GLN
15	PHE	GLU	GLY	GLU	THR	PHE	TYR	ILE	ILE	GLU
16	GLN	ARG	LEU	GLU	HIS	HIS	HIS	HIS	HIS	HIS

Samples:

sample_NC: LpR145J, [U-100% 13C; U-100% 15N], 1.41 mM; H2O 90%; D2O 10%

sample_NC5: LpR145J, [U-100% 13C; U-100% 15N], 0.90 mM; H2O 90%; D2O 10%

sample_conditions_1: pH: 7.5; pressure: 1 atm; temperature: 293 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_NC	isotropic	sample_conditions_1
2D 1H-13C HSQC	sample_NC	isotropic	sample_conditions_1
3D HNCO	sample_NC	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_NC	isotropic	sample_conditions_1
3D HNCACB	sample_NC	isotropic	sample_conditions_1
3D 1H-13C arom NOESY	sample_NC	isotropic	sample_conditions_1
3D simutaneous 13C-aromatic,13C-aliphatic,15N edited 1H-1H NOESY	sample_NC	isotropic	sample_conditions_1
3D HCCH-TOCSY	sample_NC	isotropic	sample_conditions_1
2D 1H-13C HSQC aliphatic	sample_NC5	isotropic	sample_conditions_1

Software:

CNS, Brunger, Adams, Clore, Gros, Nilges and Read - refinemen,structure solution,geometry optimization

CYANA v3.0, Guntert, Mumenthaler and Wuthrich - refinement,geometry optimization,structure solution

AutoStruct v2.1, Huang, Tejero, Powers and Montelione - data analysis,refinement

AutoAssign v2.1, Zimmerman, Moseley, Kulikowski and Montelione - data analysis,chemical shift assignment

NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

XEASY, Bartels et al. - data analysis,peak picking,chemical shift assignment

TOPSPIN, Bruker Biospin - collection

VNMRJ, Varian - collection

SPARKY, Goddard - data analysis

TALOS+, Shen, Cornilescu, Delaglio and Bax - geometry optimization

NMR spectrometers:

Bruker Avance 800 MHz
Varian INOVA 600 MHz

PDB	2LFC
EMBL	CCC80459 CDN28269
GB	ACT63669 ADO00073 AGE37659 AGL65584 AGO09388
REF	WP_003643070 WP_003643562 WP_003645691 WP_015641109 WP_021730084

1	MET	VAL	GLU	PRO	GLY	VAL	ALA	LYS	LEU	THR
2	THR	TYR	ALA	SER	LYS	GLN	ALA	THR	ASP	MET
3	GLY	ALA	ILE	TYR	VAL	ASN	SER	LYS	GLY	ASP
4	ARG	ILE	VAL	ASN	GLU	SER	ASN	VAL	TYR	THR
5	THR	PHE	ARG	ASN	ALA	ILE	LEU	LYS	GLN	ALA
6	ASP	LYS	VAL	ALA	TYR	LEU	VAL	MET	ASP	GLU
7	ARG	THR	TRP	LYS	LYS	VAL	TYR	ASP	LEU	LEU
8	ILE	LEU	HIS	ASP	PHE	THR	PRO	GLU	GLU	ILE
9	LYS	SER	PHE	PHE	GLU	ASN	LYS	GLY	LYS	ARG
10	PRO	VAL	PHE	VAL	LYS	GLY	SER	LEU	GLU	SER
11	ALA	ALA	GLU	GLN	ALA	GLY	ILE	VAL	VAL	ASP
12	GLU	LEU	VAL	GLN	THR	VAL	LYS	ASN	TYR	GLN
13	GLY	TYR	VAL	GLN	ASP	GLY	HIS	ASP	HIS	ASP
14	PHE	GLY	ARG	ASP	PRO	LYS	TYR	LEU	HIS	GLN
15	PHE	GLU	GLY	GLU	THR	PHE	TYR	ILE	ILE	GLU
16	GLN	ARG	LEU	GLU	HIS	HIS	HIS	HIS	HIS	HIS

1	MET	VAL	GLU	PRO	GLY	VAL	ALA	LYS	LEU	THR
2	THR	TYR	ALA	SER	LYS	GLN	ALA	THR	ASP	MET
3	GLY	ALA	ILE	TYR	VAL	ASN	SER	LYS	GLY	ASP
4	ARG	ILE	VAL	ASN	GLU	SER	ASN	VAL	TYR	THR
5	THR	PHE	ARG	ASN	ALA	ILE	LEU	LYS	GLN	ALA
6	ASP	LYS	VAL	ALA	TYR	LEU	VAL	MET	ASP	GLU
7	ARG	THR	TRP	LYS	LYS	VAL	TYR	ASP	LEU	LEU
8	ILE	LEU	HIS	ASP	PHE	THR	PRO	GLU	GLU	ILE
9	LYS	SER	PHE	PHE	GLU	ASN	LYS	GLY	LYS	ARG
10	PRO	VAL	PHE	VAL	LYS	GLY	SER	LEU	GLU	SER
11	ALA	ALA	GLU	GLN	ALA	GLY	ILE	VAL	VAL	ASP
12	GLU	LEU	VAL	GLN	THR	VAL	LYS	ASN	TYR	GLN
13	GLY	TYR	VAL	GLN	ASP	GLY	HIS	ASP	HIS	ASP
14	PHE	GLY	ARG	ASP	PRO	LYS	TYR	LEU	HIS	GLN
15	PHE	GLU	GLY	GLU	THR	PHE	TYR	ILE	ILE	GLU
16	GLN	ARG	LEU	GLU	HIS	HIS	HIS	HIS	HIS	HIS