BMRB Entry 17728

Name: 13C and 15N Chemical Shift Assignments for the fd Bacteriophage
Published: 2011-09-06

Chem Shift validation: AVS_anomalous, AVS_full
BMRB Entry DOI: doi:10.13018/BMR17728

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

13C and 15N Chemical Shift Assignments for the fd Bacteriophage

Deposition date:

2011-06-23

Original release date:

2011-09-06

Authors:

Goldbourt, Amir; Abramov, Gili; Morag, Omry

Citation:

Citation: Abramov, Gili; Morag, Omry; Goldbourt, Amir. "Magic-angle spinning NMR of a class I filamentous bacteriophage virus" J. Phys. Chem. B. 115, 9671-9680 (2011).
PubMed: 21702439

Assembly members:

Assembly members:
fd, polymer, 50 residues, Formula weight is not available

Natural source:

Natural source: Common Name: E. coli Taxonomy ID: 562 Superkingdom: Bacteria Kingdom: not available Genus/species: Escherichia coli

Experimental source:

Experimental source: Production method: purified from the natural source Host organism: Escherichia coli Vector: fth1

Entity Sequences (FASTA):

Entity Sequences (FASTA):
fd: AEGDDPAKAAFDSLQASATE YIGYAWAMVVVIVGATIGIK LFKKFTSKAS

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	206
15N chemical shifts	39

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	coat protein	1

Entities:

Entity 1, coat protein 50 residues - Formula weight is not available

1	ALA	GLU	GLY	ASP	ASP	PRO	ALA	LYS	ALA	ALA
2	PHE	ASP	SER	LEU	GLN	ALA	SER	ALA	THR	GLU
3	TYR	ILE	GLY	TYR	ALA	TRP	ALA	MET	VAL	VAL
4	VAL	ILE	VAL	GLY	ALA	THR	ILE	GLY	ILE	LYS
5	LEU	PHE	LYS	LYS	PHE	THR	SER	LYS	ALA	SER

Samples:

sample_1: fd, [U-99% 13C; U-99% 15N], 7 – 15 mg; Tris

sample_conditions_1: ionic strength: 10 mM; pH: 8; temperature: 273 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 13C-13C DARR	sample_1	solid	sample_conditions_1
3D NCACX	sample_1	solid	sample_conditions_1
3D NCOCX	sample_1	solid	sample_conditions_1
2D 13C-13C RFDR	sample_1	solid	sample_conditions_1

Software:

NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

SPARKY, Goddard - chemical shift assignment, data analysis

NMR spectrometers:

Bruker Avance 600 MHz

1	ALA	GLU	GLY	ASP	ASP	PRO	ALA	LYS	ALA	ALA
2	PHE	ASP	SER	LEU	GLN	ALA	SER	ALA	THR	GLU
3	TYR	ILE	GLY	TYR	ALA	TRP	ALA	MET	VAL	VAL
4	VAL	ILE	VAL	GLY	ALA	THR	ILE	GLY	ILE	LYS
5	LEU	PHE	LYS	LYS	PHE	THR	SER	LYS	ALA	SER

1	ALA	GLU	GLY	ASP	ASP	PRO	ALA	LYS	ALA	ALA
2	PHE	ASP	SER	LEU	GLN	ALA	SER	ALA	THR	GLU
3	TYR	ILE	GLY	TYR	ALA	TRP	ALA	MET	VAL	VAL
4	VAL	ILE	VAL	GLY	ALA	THR	ILE	GLY	ILE	LYS
5	LEU	PHE	LYS	LYS	PHE	THR	SER	LYS	ALA	SER

1	ALA	GLU	GLY	ASP	ASP	PRO	ALA	LYS	ALA	ALA
2	PHE	ASP	SER	LEU	GLN	ALA	SER	ALA	THR	GLU
3	TYR	ILE	GLY	TYR	ALA	TRP	ALA	MET	VAL	VAL
4	VAL	ILE	VAL	GLY	ALA	THR	ILE	GLY	ILE	LYS
5	LEU	PHE	LYS	LYS	PHE	THR	SER	LYS	ALA	SER