BMRB Entry 17717

Name: Monomeric Mouse ApoAI(1-216)
Published: 2012-12-17

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PDB ID: 2lem
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR17717
MolProbity Validation Chart

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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Monomeric Mouse ApoAI(1-216)

Deposition date:

2011-06-17

Original release date:

2012-12-17

Authors:

Chen, Jianglei; Wang, Jianjun; Yang, Yunhuang

Citation:

Citation: Chen, Jianglei; Yang, Yunhuang; Wang, Jianjun. "NMR Structure of Mouse ApoAI(1-216)" J. Biol. Chem. ., .-..

Assembly members:

Assembly members:
entity, polymer, 216 residues, 25264.260 Da.

Natural source:

Natural source: Common Name: mouse Taxonomy ID: 10090 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Mus musculus

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET30(+)

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity: DEPQSQWDKVKDFANVYVDA VKDSGRDYVSQFESSSLGQQ LNLNLLENWDTLGSTVSQLQ ERLGPLTRDFWDNLEKETDW VRQEMNKDLEEVKQKVQPYL DEFQKKWKEDVELYRQKASP QGAELQESARQKLQELQGRL SPVAEEFRDRMRTHVDSLRT QLAPHSEQMRESLAQRLAEL KSNPTLNEYHSSAKSHLKSL GEKARPALEDLRHSLM

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	660
15N chemical shifts	230
1H chemical shifts	1363

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	NMR Structure of Mouse ApoAI(1-216)	1

Entities:

Entity 1, NMR Structure of Mouse ApoAI(1-216) 216 residues - 25264.260 Da.

1

ASP

GLU

PRO

GLN

SER

GLN

TRP

ASP

LYS

VAL

2

LYS

ASP

PHE

ALA

ASN

VAL

TYR

VAL

ASP

ALA

3

VAL

LYS

ASP

SER

GLY

ARG

ASP

TYR

VAL

SER

4

GLN

PHE

GLU

SER

LEU

GLY

GLN

5

LEU

ASN

LEU

ASN

LEU

GLU

ASN

TRP

ASP

6

THR

LEU

GLY

SER

THR

VAL

SER

GLN

LEU

GLN

7

GLU

ARG

LEU

GLY

PRO

LEU

THR

ARG

ASP

PHE

8

TRP

ASP

ASN

LEU

GLU

LYS

GLU

THR

ASP

TRP

9

VAL

ARG

GLN

GLU

MET

ASN

LYS

ASP

LEU

GLU

10

GLU

VAL

LYS

GLN

LYS

VAL

GLN

PRO

TYR

LEU

11

ASP

GLU

PHE

GLN

LYS

TRP

LYS

GLU

ASP

12

VAL

GLU

LEU

TYR

ARG

GLN

LYS

ALA

SER

PRO

13

GLN

GLY

ALA

GLU

LEU

GLN

GLU

SER

ALA

ARG

14

GLN

LYS

LEU

GLN

GLU

LEU

GLN

GLY

ARG

LEU

15

SER

PRO

VAL

ALA

GLU

PHE

ARG

ASP

ARG

16

MET

ARG

THR

HIS

VAL

ASP

SER

LEU

ARG

THR

17

GLN

LEU

ALA

PRO

HIS

SER

GLU

GLN

MET

ARG

18

GLU

SER

LEU

ALA

GLN

ARG

LEU

ALA

GLU

LEU

19

LYS

SER

ASN

PRO

THR

LEU

ASN

GLU

TYR

HIS

20

SER

ALA

LYS

SER

HIS

LEU

LYS

SER

LEU

21

GLY

GLU

LYS

ALA

ARG

PRO

ALA

LEU

GLU

ASP

22

LEU

ARG

HIS

SER

LEU

MET

Samples:

13C15N_labeled: entity, [U-100% 13C; U-100% 15N], ~1.0 mM; DSS 0.03 mM; sodium azide 0.01 mM; EDTA, [U-100% 2H], 10 mM; sodium phosphate 25 mM; H2O 90%; D2O 10%

Triple_labeled: entity, [U-13C; U-15N; U-2H], ~1.0 mM; DSS 0.03 mM; sodium azide 0.01 mM; EDTA, [U-100% 2H], 10 mM; sodium phosphate 25 mM; H2O 90%; D2O 10%

sample_conditions_1: pH: 6.8; pressure: 1 atm; temperature: 273 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	13C15N_labeled	isotropic	sample_conditions_1
3D HNCA	Triple_labeled	isotropic	sample_conditions_1
3D HN(CO)CA	Triple_labeled	isotropic	sample_conditions_1
3D HNCACB	Triple_labeled	isotropic	sample_conditions_1
3D HN(COCA)CB	Triple_labeled	isotropic	sample_conditions_1
3D 1H-15N NOESY	13C15N_labeled	isotropic	sample_conditions_1
3D HCCH-TOCSY	13C15N_labeled	isotropic	sample_conditions_1
3D CCC-TOCSY-NNH	13C15N_labeled	isotropic	sample_conditions_1
4D 13C15N NOESY	13C15N_labeled	isotropic	sample_conditions_1

Software:

NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

CYANA, Guntert, Mumenthaler and Wuthrich - structure solution

ProcheckNMR, Laskowski and MacArthur - refinement

NMRView, Johnson, One Moon Scientific - chemical shift assignment

PIPP, Garrett - chemical shift assignment

VNMR, Varian - collection

TALOS, Cornilescu, Delaglio and Bax - chemical shift calculation

InsightII, Accelrys Software Inc. - refinement

CSI, Johnson, One Moon Scientific - chemical shift calculation

NMR spectrometers:

Varian INOVA 600 MHz