BMRB Entry 17700
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR17700
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Citation: Marulanda, Dabeiba; Tasayco, Maria Luisa; Cataldi, Marcela; Arriaran, Vilma; Polenova, Tatyana. "Resonance Assignments and Secondary Structure Analysis of E. coli Thioredoxin by Magic Angle Spinning Solid-State NMR Spectroscopy" J. Phys. Chem. B 109, 18135-18145 (2005).
PubMed: 16853329
Assembly members:
TRX_intact, polymer, 108 residues, Formula weight is not available
Natural source: Common Name: E. coli Taxonomy ID: 562 Superkingdom: Bacteria Kingdom: not available Genus/species: Escherichia coli
Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pTK100
Entity Sequences (FASTA):
TRX_intact: SDKIIHLTDDSFDTDVLKAD
GAILVDFWAEWCGPCKMIAP
ILDEIADEYQGKLTVAKLNI
DQNPGTAPKYGIRGIPTLLL
FKNGEVAATKVGALSKGQLK
EFLDANLA
- assigned_chemical_shifts
| Data type | Count |
| 13C chemical shifts | 487 |
| 15N chemical shifts | 106 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | TRX Intact | 1 |
Entities:
Entity 1, TRX Intact 108 residues - Formula weight is not available
| 1 | SER | ASP | LYS | ILE | ILE | HIS | LEU | THR | ASP | ASP | ||||
| 2 | SER | PHE | ASP | THR | ASP | VAL | LEU | LYS | ALA | ASP | ||||
| 3 | GLY | ALA | ILE | LEU | VAL | ASP | PHE | TRP | ALA | GLU | ||||
| 4 | TRP | CYS | GLY | PRO | CYS | LYS | MET | ILE | ALA | PRO | ||||
| 5 | ILE | LEU | ASP | GLU | ILE | ALA | ASP | GLU | TYR | GLN | ||||
| 6 | GLY | LYS | LEU | THR | VAL | ALA | LYS | LEU | ASN | ILE | ||||
| 7 | ASP | GLN | ASN | PRO | GLY | THR | ALA | PRO | LYS | TYR | ||||
| 8 | GLY | ILE | ARG | GLY | ILE | PRO | THR | LEU | LEU | LEU | ||||
| 9 | PHE | LYS | ASN | GLY | GLU | VAL | ALA | ALA | THR | LYS | ||||
| 10 | VAL | GLY | ALA | LEU | SER | LYS | GLY | GLN | LEU | LYS | ||||
| 11 | GLU | PHE | LEU | ASP | ALA | ASN | LEU | ALA |
Samples:
sample_1: TRX Intact, [U-100% 13C; U-100% 15N], mM; H2O 100%
sample_conditions_1: ionic strength: . M; pH: 7; pressure: 1 atm; temperature: 273 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 2D C-C DARR | sample_1 | solid | sample_conditions_1 |
| 2D N-CA SPECIFIC CP | sample_1 | solid | sample_conditions_1 |
| 2D N-CO SPECIFIC CP | sample_1 | solid | sample_conditions_1 |
| 2D N-CA-CX | sample_1 | solid | sample_conditions_1 |
| 2D N-CO-CX | sample_1 | solid | sample_conditions_1 |
Software:
NMRPipe_and_SPARKY, Delaglio, Zhengrong and Bax, Goddard - chemical shift assignment, processing
NMR spectrometers:
- Bruker Avance 750 MHz
Related Database Links:
| BMRB | 1812 1813 |
| PDB | |
| DBJ | BAA00903 BAB38137 BAE77517 BAG79587 BAH61053 |
| EMBL | CAA79851 CAD09400 CAP78228 CAQ34125 CAQ91183 |
| GB | AAA24533 AAA24534 AAA24693 AAA24694 AAA24696 |
| PIR | AF0922 B91218 C86064 |
| REF | NP_312741 NP_418228 NP_457831 NP_462806 NP_709584 |
| SP | P0AA25 P0AA26 P0AA27 P0AA28 P0AA29 |
| AlphaFold | P0AA25 P0AA26 P0AA27 P0AA28 P0AA29 |