BMRB Entry 17661

Title:
Solution structure of the long sarafotoxin srtx-i3
Deposition date:
2011-05-24
Original release date:
2012-05-09
Authors:
Cordier, Florence; Zorba, Adelajda; Hajj, Marianna; Ducancel, Frederic; Servent, Denis; Delepierre, Muriel
Citation:

Citation: Mourier, Gilles; Hajj, Mariana; Cordier, Florence; Zorba, Adelajda; Gao, XingHuang; Coskun, Tolga; Herbet, Amaury; Marcon, Elodie; Beau, Fabrice; Delepierre, Muriel; Ducancel, Frederic; Servent, Denis. "Pharmacological and structural characterization of long-sarafotoxins, a new family of endothelin-like peptides: Role of the C-terminus extension."  Biochimie 94, 461-470 (2012).
PubMed: 21889567

Assembly members:

Assembly members:
srtx-i3, polymer, 25 residues, 2967.403 Da.

Natural source:

Natural source:   Common Name: snake   Taxonomy ID: 512568   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Atractaspis irregularis

Experimental source:

Experimental source:   Production method: chemical synthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
srtx-i3: CSCTDMSDLECMNFCHKDVI WVNRN

Data sets:
Data typeCount
1H chemical shifts170

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1srtx-i31

Entities:

Entity 1, srtx-i3 25 residues - 2967.403 Da.

1   CYSSERCYSTHRASPMETSERASPLEUGLU
2   CYSMETASNPHECYSHISLYSASPVALILE
3   TRPVALASNARGASN

Samples:

sample_1: srtx-i3 3 mM; H2O 90%; D2O 10%

sample_25C: ionic strength: 0 M; pH: 4.5; pressure: 1 atm; temperature: 298 K

sample_35C: ionic strength: 0 M; pH: 4.5; pressure: 1 atm; temperature: 308 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-1H COSYsample_1isotropicsample_25C
2D 1H-1H TOCSYsample_1isotropicsample_25C
2D 1H-1H NOESYsample_1isotropicsample_25C
2D 1H-1H TOCSYsample_1isotropicsample_35C
2D 1H-1H NOESYsample_1isotropicsample_35C

Software:

VNMRJ, Varian - collection

NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

NMRView, Johnson, One Moon Scientific - chemical shift assignment, data analysis, peak picking

ARIA, Linge, O'Donoghue and Nilges - refinement, structure solution

NMR spectrometers:

  • Varian INOVA 600 MHz
  • Varian INOVA 500 MHz

Related Database Links:

PDB