BMRB Entry 17460

Name: The Stability and Dynamics of Ribosomal Protein L9: Investigations of a Molecular Strut by Amide Proton Exchange and Circular Dichroism
Published: 2016-06-09

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR17460

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

The Stability and Dynamics of Ribosomal Protein L9: Investigations of a Molecular Strut by Amide Proton Exchange and Circular Dichroism

Deposition date:

2011-02-11

Original release date:

2016-06-09

Authors:

Lillemoen, Jarle; Cameron, Christopher; Hoffman, David

Citation:

Citation: Lillemoen, Jarle; Cameron, Christopher; Hoffman, David. "The Stability and Dynamics of Ribosomal Protein L9: Investigations of a Molecular Strut by Amide Proton Exchange and Circular Dichroism" J. Mol. Biol. 268, 482-493 (1997).

Assembly members:

Assembly members:
L9, polymer, 149 residues, Formula weight is not available

Natural source:

Natural source: Common Name: B. stearothermophilus Taxonomy ID: 1422 Superkingdom: Bacteria Kingdom: not available Genus/species: Geobacillus stearothermophilus

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: ns

Entity Sequences (FASTA):

Entity Sequences (FASTA):
L9: MKVIFLKDVKGKGKKGEIKN VADGYANNFLFKQGLAIEAT PANLKALEAQKQKEQRQAAE ELANAKKLKEQLEKLTVTIP AKAGEGGRLFGSITSKQIAE SLQAQHGLKLDKRKIELADA IRALGYTNVPVKLHPEVTAT LKVHVTEQK

Data sets:

chemical_rates
- Chemical_rate_list

Data type

Count

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	L9	1

Entities:

Entity 1, L9 149 residues - Formula weight is not available

1

MET

LYS

VAL

ILE

PHE

LEU

LYS

ASP

VAL

LYS

2

GLY

LYS

GLY

LYS

GLY

GLU

ILE

LYS

ASN

3

VAL

ALA

ASP

GLY

TYR

ALA

ASN

PHE

LEU

4

PHE

LYS

GLN

GLY

LEU

ALA

ILE

GLU

ALA

THR

5

PRO

ALA

ASN

LEU

LYS

ALA

LEU

GLU

ALA

GLN

6

LYS

GLN

LYS

GLU

GLN

ARG

GLN

ALA

GLU

7

GLU

LEU

ALA

ASN

ALA

LYS

LEU

LYS

GLU

8

GLN

LEU

GLU

LYS

LEU

THR

VAL

THR

ILE

PRO

9

ALA

LYS

ALA

GLY

GLU

GLY

ARG

LEU

PHE

10

GLY

SER

ILE

THR

SER

LYS

GLN

ILE

ALA

GLU

11

SER

LEU

GLN

ALA

GLN

HIS

GLY

LEU

LYS

LEU

12

ASP

LYS

ARG

LYS

ILE

GLU

LEU

ALA

ASP

ALA

13

ILE

ARG

ALA

LEU

GLY

TYR

THR

ASN

VAL

PRO

14

VAL

LYS

LEU

HIS

PRO

GLU

VAL

THR

ALA

THR

15

LEU

LYS

VAL

HIS

VAL

THR

GLU

GLN

LYS

Samples:

sample_1: L9, [U-100% 15N], ns mM; D2O 100%

sample_conditions_1: pH: 7.0; pressure: 1 atm; temperature: 305 K

Experiments:

Name	Sample	Sample state	Sample conditions
1H-2H HSMQC exchange	sample_1	isotropic	sample_conditions_1

Software:

MOLSCRIPT, Kraulis, 1991 - ribbon drawing

MIDAS, Ferrin et al., 1988; Huang et al., 1991 - figure representation

NMR spectrometers:

Varian INOVA 500 MHz