BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 17299

Title: 1H, 13C and 15N Chemical shift assignments of the thioredoxin from the anaerobic bacteria Desulfovibrio vulgaris Hildenborough   PubMed: 21287302

Deposition date: 2010-11-16 Original release date: 2011-02-04

Authors: Garcin, Edwige; Bornet, Olivier; Sebban-Kreuzer, Corinne; Guerlesquin, Francoise

Citation: Garcin, Edwige; Bornet, Olivier; Pieulle, Laetitia; Guerlesquin, Francoise; Sebban-Kreuzer, Corinne. "1H, 13C and 15N chemical shift assignments of the thioredoxin from the obligate anaerobe Desulfovibrio vulgaris Hildenborough."  Biomol. NMR Assignments 5, 177-179 (2011).

Assembly members:
Thioredoxin, polymer, 113 residues, Formula weight is not available

Natural source:   Common Name: Desulfovibrio vulgaris   Taxonomy ID: 881   Superkingdom: Bacteria   Kingdom: not available   Genus/species: Desulfovibrio vulgaris

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli   Vector: pJF

Entity Sequences (FASTA):
Thioredoxin: HHHHHHMAAQITDATFEASV LKSAIPVLIDFWAPWCGPCR AMGPVIDELAAEYEGKVLIV KMNVDDNPATPSKYGIRAIP TLILFKNGEVVEQVTGAVSK SSIKDMIAQKALG

Data sets:
Data typeCount
13C chemical shifts460
15N chemical shifts110
1H chemical shifts773

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1thioredoxin1

Entities:

Entity 1, thioredoxin 113 residues - Formula weight is not available

1   HISHISHISHISHISHISMETALAALAGLN
2   ILETHRASPALATHRPHEGLUALASERVAL
3   LEULYSSERALAILEPROVALLEUILEASP
4   PHETRPALAPROTRPCYSGLYPROCYSARG
5   ALAMETGLYPROVALILEASPGLULEUALA
6   ALAGLUTYRGLUGLYLYSVALLEUILEVAL
7   LYSMETASNVALASPASPASNPROALATHR
8   PROSERLYSTYRGLYILEARGALAILEPRO
9   THRLEUILELEUPHELYSASNGLYGLUVAL
10   VALGLUGLNVALTHRGLYALAVALSERLYS
11   SERSERILELYSASPMETILEALAGLNLYS
12   ALALEUGLY

Samples:

sample_1: oxidized thioredoxin, [U-99% 13C; U-99% 15N], 1 mM; H2O 90%; D2O 10%; NaCl 100 mM; Potassium phosphate 50 mM

sample_conditions_1: ionic strength: 0.1 M; pH: 5.5; pressure: 1 atm; temperature: 290 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-15N HSQCsample_1isotropicsample_conditions_1
2D 1H-13C HSQCsample_1isotropicsample_conditions_1
2D 1H-1H TOCSYsample_1isotropicsample_conditions_1
2D 1H-1H NOESYsample_1isotropicsample_conditions_1
3D CBCA(CO)NHsample_1isotropicsample_conditions_1
3D HNCOsample_1isotropicsample_conditions_1
3D HNCACBsample_1isotropicsample_conditions_1
3D HCCH-TOCSYsample_1isotropicsample_conditions_1
3D 1H-15N NOESYsample_1isotropicsample_conditions_1
3D HNCAsample_1isotropicsample_conditions_1
3D HNHAsample_1isotropicsample_conditions_1
3D HBHA(CO)NHsample_1isotropicsample_conditions_1
3D HN(CO)CAsample_1isotropicsample_conditions_1
3D 1H-13C NOESYsample_1isotropicsample_conditions_1

Software:

CARA, Keller and Wuthrich - chemical shift assignment

NMR spectrometers:

  • Bruker Avance 600 MHz

Related Database Links:

BMRB 17300
GB AAS96315 ABM28341 ADP86621
REF WP_010939125 YP_011056

Download simulated HSQC data in one of the following formats:
CSV: Backbone or all simulated shifts
SPARKY: Backbone or all simulated shifts